Shingo Masuno

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Alignment problems in computational biology have been focused recently because of the rapid growth of sequence databases. By computing alignment, we can understand similarity among the sequences. Many systems for alignment have been proposed to date, but most of them are designed for two-dimensional alignment (alignment between two sequences). In this(More)
Multiple sequence alignment problems in computational biology have been focused recently because of the rapid growth of sequence databases. By computing alignment, we can understand similarity among the sequences. In this paper, we describe a compact system with an FPGA board and a host computer for multiple sequence alignment based on Carrillo-Lipman(More)
Alignment problems in computational biology have been focused recently because of the rapid growth of sequence databases. By computing alignment, we can understand similarity among the sequences. Dynamic programming is a technique to find optimal alignment, but it requires very long computation time. We have shown that dynamic programming for more than two(More)
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