Shaohua Fu

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We have developed GSNP, a software package with GPU acceleration, for single-nucleotide polymorphism detection on DNA sequences generated from second-generation sequencing equipment. Compared with SOAPsnp, a popular, high-performance CPU-based SNP detection tool, GSNP has several distinguishing features: First, we design a sparse data representation format(More)
iii To my parents, my wife and lovely kids Michelle and Michael Huang. iv Acknowledgements First of all, I would like to thank my advisors, Prof. Andrzej Zieminski and Dr. Daria Zieminska for their guidance, support and attention to detail over the 5 years. Their knowlege and enthusiasm, unique way of approaching problems have been a continual source of(More)
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