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Scientists working with single-nucleotide variants (SNVs), inferred by next-generation sequencing software, often need further information regarding true variants, artifacts and sequence coverage gaps. In clinical diagnostics, e.g. SNVs must usually be validated by visual inspection or several independent SNV-callers. We here demonstrate that 0.5-60% of(More)
In this paper we develop a new limiter for linear reconstruction on non-coordinate-aligned meshes in two space dimensions, with focus on Cartesian embedded boundary grids. Our limiter is inherently two-dimensional and linearity preserving. It separately limits the x and y components of the gradient, as opposed to a scalar limiter which limits all components(More)
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