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- Joakim Nivre, Marie-Catherine de Marneffe, +9 authors Daniel Zeman
- LREC
- 2016
Cross-linguistically consistent annotation is necessary for sound comparative evaluation and cross-lingual learning experiments. It is also useful for multilingual system development and comparative… (More)
- Jin-Dong Kim, Tomoko Ohta, Sampo Pyysalo, Yoshinobu Kano, Jun'ichi Tsujii
- BioNLP@HLT-NAACL
- 2009
The paper presents the design and implementation of the BioNLP’09 Shared Task, and reports the final results with analysis. The shared task consists of three sub-tasks, each of which addresses… (More)
- Antti Airola, Sampo Pyysalo, Jari Björne, Tapio Pahikkala, Filip Ginter, Tapio Salakoski
- BMC Bioinformatics
- 2008
Automated extraction of protein-protein interactions (PPI) is an important and widely studied task in biomedical text mining. We propose a graph kernel based approach for this task. In contrast to… (More)
- Sampo Pyysalo, Filip Ginter, +4 authors Tapio Salakoski
- BMC Bioinformatics
- 2006
Lately, there has been a great interest in the application of information extraction methods to the biomedical domain, in particular, to the extraction of relationships of genes, proteins, and RNA… (More)
We introduce the brat rapid annotation tool (BRAT), an intuitive web-based tool for text annotation supported by Natural Language Processing (NLP) technology. BRAT has been developed for rich… (More)
- Claire Nedellec, Robert Bossy, +4 authors Pierre Zweigenbaum
- BioNLP@ACL
- 2013
- Sampo Pyysalo, Antti Airola, Juho Heimonen, Jari Björne, Filip Ginter, Tapio Salakoski
- BMC Bioinformatics
- 2008
Growing interest in the application of natural language processing methods to biomedical text has led to an increasing number of corpora and methods targeting protein-protein interaction (PPI)… (More)
- Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Robert Bossy, Ngan L. T. Nguyen, Jun'ichi Tsujii
- BioNLP@ACL
- 2011
The BioNLP Shared Task 2013 is the third edition of the BioNLP Shared Task series that is a community-wide effort to address fine-grained, structural information extraction from biomedical… (More)
- Sampo Pyysalo, Tomoko Ohta, Makoto Miwa, Han-Cheol Cho, Jun'ichi Tsujii, Sophia Ananiadou
- Bioinformatics
- 2012
MOTIVATION
Event extraction using expressive structured representations has been a significant focus of recent efforts in biomedical information extraction. However, event extraction resources and… (More)
- Billy Chiu, Gamal K. O. Crichton, Anna Korhonen, Sampo Pyysalo
- BioNLP@ACL
- 2016
AWARDS, PRIZES and SCHOLARSHIPS: August 2015: Cambridge International Scholarship, Cambridge European and International Trust. April 2013: 1 Place presentation at the University of Western Ontario… (More)