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- Publications
- Influence
Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags
- Paul A Hohenlohe, S. Bassham, P. Etter, Nicholas Stiffler, E. Johnson, W. Cresko
- Biology, Medicine
- PLoS genetics
- 1 February 2010
Next-generation sequencing technology provides novel opportunities for gathering genome-scale sequence data in natural populations, laying the empirical foundation for the evolving field of… Expand
Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes
- Paul A Hohenlohe, S. Bassham, Mark C. Currey, W. Cresko
- Biology, Medicine
- Philosophical Transactions of the Royal Society B…
- 5 February 2012
Population genomic studies are beginning to provide a more comprehensive view of dynamic genome-scale processes in evolution. Patterns of genomic architecture, such as genomic islands of increased… Expand
SNP discovery and genotyping for evolutionary genetics using RAD sequencing.
- P. Etter, S. Bassham, Paul A Hohenlohe, E. Johnson, W. Cresko
- Biology, Medicine
- Methods in molecular biology
- 2011
Next-generation sequencing technologies are revolutionizing the field of evolutionary biology, opening the possibility for genetic analysis at scales not previously possible. Research in population… Expand
Development of the central nervous system in the larvacean Oikopleura dioica and the evolution of the chordate brain.
- C. Cañestro, S. Bassham, J. Postlethwait
- Biology, Medicine
- Developmental biology
- 15 September 2005
In non-vertebrate chordates, central nervous system (CNS) development has been studied in only two taxa, the Cephalochordata and a single Class (Ascidiacea) of the morphologically diverse… Expand
Telomere Variation in Xenopus laevis
- S. Bassham, A. Beam, J. Shampay
- Biology, Medicine
- Molecular and Cellular Biology
- 1 January 1998
ABSTRACT Eukaryotic telomeres are variable at several levels, from the length of the simple sequence telomeric repeat tract in different cell types to the presence or number of telomere-adjacent DNA… Expand
Evolution of the thyroid: Anterior–posterior regionalization of the Oikopleura endostyle revealed by Otx, Pax2/5/8, and Hox1 expression
- C. Cañestro, S. Bassham, J. Postlethwait
- Biology, Medicine
- Developmental dynamics : an official publication…
- 1 May 2008
The thyroid in vertebrates and its homolog, the endostyle in nonvertebrate chordates, share a molecular code for dorsoventral patterning. Little is yet known, however, about mechanisms that pattern… Expand
A novel minisatellite at a cloned hamster telomere
- J. Shampay, M. Schmitt, S. Bassham
- Biology, Medicine
- Chromosoma
- 1 October 1995
The ends of eukaryotic chromosomes have special properties and roles in chromosome behavior. Selection for telomere function in yeast, using a Chinese hamster hybrid cell line as the source DNA,… Expand
Genetic divergence outpaces phenotypic evolution among threespine stickleback populations in old freshwater habitats
- Mark C. Currey, S. Bassham, W. Cresko
- Biology
- 17 September 2019
Chromonomer: A Tool Set for Repairing and Enhancing Assembled Genomes Through Integration of Genetic Maps and Conserved Synteny
- Julian Catchen, A. Amores, S. Bassham
- Medicine, Biology
- G3
- 10 September 2020
The pace of the sequencing and computational assembly of novel reference genomes is accelerating. Though DNA sequencing technologies and assembly software tools continue to improve, biological… Expand