S. Baden

Publications
Influence

Fast Monte Carlo Simulation Methods for Biological Reaction-Diffusion Systems in Solution and on Surfaces

Rex A. Kerr, T. Bartol, +5 authors J. Stiles
Computer Science, Medicine
SIAM J. Sci. Comput.
1 October 2008

We describe and validate new tools and algorithms developed for a new version of the MCell simulation program (MCell3), which supports generalized Monte Carlo modeling of diffusion and chemical reaction in solution, on surfaces representing membranes, and combinations thereof. Expand

Accelerating Viola-Jones Face Detection to FPGA-Level Using GPUs

Daniel Hefenbrock, J. Oberg, Nhat Thanh, R. Kastner, S. Baden
Computer Science
18th IEEE Annual International Symposium on Field…
2 May 2010

We present a multi-GPU implementation of the Viola-Jones face detection algorithm that meets the performance of the fastest known FPGA implementation. Expand

Mint: realizing CUDA performance in 3D stencil methods with annotated C

D. Unat, X. Cai, S. Baden
Computer Science
ICS '11
31 May 2011

We present Mint, a programming model that enables the non-expert to enjoy the performance benefits of hand coded CUDA without becoming entangled in the details. Expand

Dynamic Partitioning of Non-Uniform Structured Workloads with Spacefilling Curves

John R. Pilkington, S. Baden
Computer Science
IEEE Trans. Parallel Distributed Syst.
1 March 1996

We discuss inverse spacefilling partitioning (ISP), a partitioning strategy for non-uniform scientific computations running on distributed memory MIMD parallel computers, and compare ISP against orthogonal recursive bisection (ORE) and a median of medians variant of ORE. Expand

Analysis of the numerical effects of parallelism on a parallel genetic algorithm

W. Hart, S. Baden, R. Belew, S. Kohn
Computer Science
Proceedings of International Conference on…
15 April 1996

We examine the effects of relaxed synchronization on both the numerical and parallel efficiency of parallel genetic algorithms (GAs). Expand

A local corrections algorithm for solving Poisson’s equation in three dimensions

P. McCorquodale, P. Colella, G. Balls, S. Baden
Mathematics
30 October 2006

We present a second-order accurate algorithm for solving the free-space Poisson's equation on a locally-refined nested grid hierarchy in three dimensions. Our approach is based on linear… Expand

Redefining the Role of the CPU in the Era of CPU-GPU Integration

Manish Arora, Siddhartha Nath, Subhra Mazumdar, S. Baden, Dean M. Tullsen
Computer Science
IEEE Micro
1 November 2012

We've seen the quick adoption of GPUs as general purpose computing engines in recent years, fueled by high computational throughput and energy efficiency. Expand

Accelerating a 3D Finite-Difference Earthquake Simulation with a C-to-CUDA Translator

D. Unat, J. Zhou, Y. Cui, S. Baden, X. Cai
Computer Science
Computing in Science & Engineering
1 May 2012

An annotation-based programming model, called Mint, and its accompanying source-to-source translator are used to automatically generate CUDA source code and simplify the exploration of performance tradeoffs. Expand

An Efficient Implementation of a Local Binning Algorithm for Digital Elevation Model Generation of LiDAR/ALSM Dataset

H. Kim, J. Arrowsmith, +6 authors C. Baru
Geology, Geography
1 December 2006

H. S. Kim, J R. Arrowsmith, C. J. Crosby, E. Jaeger-Frank, V. Nandigam, A. Memon, J. Conner, S. B. Baden, C. Baru Department of Computer Science and Engineering, University of California, San Diego… Expand

Efficient Run-Time Support for Irregular Block-Structured Applications

Stephen J. Fink, S. Baden, S. Kohn
Computer Science
J. Parallel Distributed Comput.
1 April 1998

We describe a set of intuitive geometric programming abstractions that simplify coordination of irregular block-structured scientific calculations without sacrificing performance. Expand

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