The significance of digital gene expression profiles.
- S. Audic, J. Claverie
- BiologyGenome Research
- 1 October 1997
The first systematic study on the influence of random fluctuations and sampling size on the reliability of transcript profiles generated routinely by partially sequencing thousands of randomly selected clones from relevant cDNA libraries is presented.
Phylogeny.fr: robust phylogenetic analysis for the non-specialist
- A. Dereeper, V. Guignon, O. Gascuel
- BiologyNucleic Acids Res.
- 19 April 2008
The Phylogeny.fr platform transparently chains programs to automatically perform phylogenetic analyses and can also meet the needs of specialists; the first ones will find up-to-date tools chained in a phylogeny pipeline to analyze their data in a simple and robust way, while the specialists will be able to easily build and run sophisticated analyses.
Comparative Genomics of Multidrug Resistance in Acinetobacter baumannii
- P. Fournier, D. Vallenet, J. Claverie
- BiologyPLoS Genetics
- 1 January 2006
Acinetobacter baumannii is a species of nonfermentative gram-negative bacteria commonly found in water and soil. This organism was susceptible to most antibiotics in the 1970s. It has now become a…
The 1.2-Megabase Genome Sequence of Mimivirus
- D. Raoult, S. Audic, J. Claverie
- BiologyScience
- 19 November 2004
The size and complexity of the Mimivirus genome challenge the established frontier between viruses and parasitic cellular organisms and this new sequence data might help shed a new light on the origin of DNA viruses and their role in the early evolution of eukaryotes.
The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy
- L. Guillou, D. Bachar, R. Christen
- BiologyNucleic Acids Res.
- 26 November 2012
The presence of both rRNA and rDNA sequences, taking into account introns (crucial for eukaryotic sequences), a normalized eight terms ranked-taxonomy and updates of new GenBank releases were made possible by a long-term collaboration between experts in taxonomy and computer scientists.
Eukaryotic plankton diversity in the sunlit ocean
- C. de Vargas, S. Audic, E. Karsenti
- Environmental ScienceScience
- 22 May 2015
Diversity emerged at all taxonomic levels, both within the groups comprising the ~11,200 cataloged morphospecies of eukaryotic plankton and among twice as many other deep-branching lineages of unappreciated importance in plankton ecology studies.
A Giant Virus in Amoebae
During a study following a pneumonia outbreak in 1992, a microorganism growing in amoebae and resembling a small Gram-positive coccus ([Fig. 1][1]A) was isolated from the water of a cooling tower in…
Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee
- F. Armougom, S. Moretti, C. Notredame
- Biology, Computer ScienceNucleic Acids Res.
- 1 July 2006
Expresso is a multiple sequence alignment server that aligns sequences using structural information using PDB structures used as templates to guide the alignment of the original sequences using structure-based sequence alignment methods like SAP or Fugue.
BLAST-EXPLORER helps you building datasets for phylogenetic analysis
- A. Dereeper, S. Audic, J. Claverie, G. Blanc
- BiologyBMC Evolutionary Biology
- 12 January 2010
BLAST-Explorer is an original and friendly web-based application that combines a BLAST search with a suite of tools that allows interactive, phylogenetic-oriented exploration of theBLAST results and flexible selection of homologous sequences among the BLAST hits.
Patterns of Rare and Abundant Marine Microbial Eukaryotes
- R. Logares, S. Audic, R. Massana
- Environmental ScienceCurrent Biology
- 14 April 2014
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