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Data Set Used
Long noncoding RNA (lncRNA) within mRNA sequences of Alzheimer's disease genes, namely, APP, APOE, PSEN1, and PSEN2, has been analyzed using fractal dimension (FD) computation and correlation analysis. We examined lncRNA by comparing mRNA FD to corresponding coding DNA sequences (CDSs) FD. APP, APOE, and PSEN1 CDSs select slightly higher FDs compared to the… (More)
DNA informatics represented by Shannon entropy and fractal dimension have been used to form 2D maps of related genes in various mammals. The distance between points on these maps for corresponding mRNA sequences in different species is used to study evolution. By quantifying the similarity of genes between species, this distance might be indicated when… (More)
" Cyanobacteria gene and protein sequences in diurnal oscillation metabolic processes, " Proc SPIE 7819, art. no. 78190U (2010). " Cyanobacteria gene and protein sequences in diurnal oscillation metabolic processes, " Proc SPIE 7819, art. no. 78190U (2010).
The CYP2E1 CpG methylation sites in the first intron (site +626 to +742 from the starting ATG) as reported in a 2015 epigenetics psychiatry study were analyzed from a bioinformatics perspective. The studied sequences for human, monkey, dog and cow showed a high correlation (R-sq > 0.99) between CpG content and mononucleotide entropy. A… (More)