Rupali V. Parbhane

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Two new encoding strategies, namely, wedge and twist codes, which are based on the DNA helical parameters, are introduced to represent DNA sequences in artificial neural network (ANN)-based modeling of biological systems. The performance of the new coding strategies has been evaluated by conducting three case studies involving mapping (modeling) and(More)
MOTIVATION Our aim is to utilize an artificial neural network (ANN) for the prediction of DNA curvature in terms of retardation anomaly. RESULTS An ANN capturing the role of phasing, increased helix flexibility, run of poly(A) tracts and flanking base pair effects in determining the extent of DNA curvature has been developed. The network predictions(More)
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