Rumen Andonov

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For 2-D iteration space tiling, we address the problem of determining the tile parameters that minimize the total execution time under the BSP model. We consider uniform dependency computations, tiled so that (at least) one of the tile boundaries is parallel to the domain boundary. We determine the optimal tile size as a closed form solution. In addition,(More)
Among the measures for quantifying the similarity between protein 3-D structures, contact map overlap (CMO) maximization deserved sustained attention during past decade. Despite this large involvement, the known algorithms possess a modest performance and are not applicable for large scale comparison. This paper offers a clear advance in this respect. We(More)
Dynamic programming is an important combinatorial optimization technique that has been widely used in various fields such as control theory, operations research, computational biology and computer science. Many authors have described parallel dynamic programming algorithms for the family of multistage problems. More scarce is the literature for the more(More)
Among the measures for quantifying the similarity between three-dimensional (3D) protein structures, maximum contact map overlap (CMO) received sustained attention during the past decade. Despite this, the known algorithms exhibit modest performance and are not applicable for large-scale comparison. This article offers a clear advance in this respect. We(More)
This paper presents the results of the SHREC’10 Protein Models Classification Track. The aim of this track is to evaluate how well 3D shape recognition algorithms can classify protein structures according to the CATH [CSL08] superfamily classification. Five groups participated in this track, using a total of six methods, and for each method a set of ranked(More)