• Publications
  • Influence
Genomic variation in 3,010 diverse accessions of Asian cultivated rice
Here we analyse genetic variation, population structure and diversity among 3,010 diverse Asian cultivated rice (Oryza sativa L.) genomes from the 3,000 Rice Genomes Project. Our results areExpand
  • 348
  • 23
  • PDF
SNP-Seek database of SNPs derived from 3000 rice genomes
TLDR
We have identified about 20 million rice SNPs by aligning reads from the 3000 rice genomes project with the Nipponbare genome. Expand
  • 207
  • 23
  • PDF
Rice SNP-seek database update: new SNPs, indels, and queries
TLDR
We describe updates to the Rice SNP-Seek Database since its first release. Expand
  • 101
  • 9
  • PDF
Structural variants in 3000 rice genomes.
Investigation of large structural variants (SVs) is a challenging yet important task in understanding trait differences in highly repetitive genomes. Combining different bioinformatic approaches forExpand
  • 34
  • 4
SNP-Seek II: A resource for allele mining and analysis of big genomic data in Oryza sativa ☆
Abstract The 3000 Rice Genomes Project generated a large dataset of genomic variation to the world’s most important crop, Oryza sativa L. Using the Burrows-Wheeler Aligner (BWA) and the GenomeExpand
  • 32
  • 4