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The Pathosystems Resource Integration Center (PATRIC) is the all-bacterial Bioinformatics Resource Center (BRC) (http://www.patricbrc.org). A joint effort by two of the original National Institute of Allergy and Infectious Diseases-funded BRCs, PATRIC provides researchers with an online resource that stores and integrates a variety of data types [e.g.(More)
The PathoSystems Resource Integration Center (PATRIC) is one of eight Bioinformatics Resource Centers (BRCs) funded by the National Institute of Allergy and Infection Diseases (NIAID) to create a data and analysis resource for selected NIAID priority pathogens, specifically proteobacteria of the genera Brucella, Rickettsia and Coxiella, and corona-, calici-(More)
The NIAID-funded Biodefense Proteomics Resource Center (RC) provides storage, dissemination, visualization and analysis capabilities for the experimental data deposited by seven Proteomics Research Centers (PRCs). The data and its publication is to support researchers working to discover candidates for the next generation of vaccines, therapeutics and(More)
The Pathosystems Resource Integration Center (PATRIC) is the bacterial Bioinformatics Resource Center (https://www.patricbrc.org). Recent changes to PATRIC include a redesign of the web interface and some new services that provide users with a platform that takes them from raw reads to an integrated analysis experience. The redesigned interface allows(More)
Web services is distributed computing technology that provides software services over the Web. The Cyberinfrastructure Group at the Virginia Bioinformatics Institute (VBI) has adopted the Web service architecture and wrapped a wide variety of bioinformatics applications and data resources using the technology. Users can browse various data resources and(More)
Pyrolysis mass spectrometry is a data rich analysis technique now becoming widely applied in microbiology. Data analysis is a key step in the exploitation of the technique and the application of neural network analysis to pyrolysis mass spectrometric data offers new opportunities for classification, identification and inter-strain comparison of(More)
– This paper describes a generalized web-based framework for VBI pathosystems informatics & bioinformatics web services. The framework provides a universal mechanism for accessing web services through web browsers. A web service can be configured to the framework easily. The framework is designed using object-oriented methodology and implemented using Java(More)
Residue analysis frequently presents a challenge to the quality assurance (QA) auditor due to the sheer volume of data to be audited. In the face of multiple boxes of raw data, some process must be defined that assures the scientist and the QA auditor of the quality and integrity of the data. A program that ensures that complete and appropriate verification(More)
– The VBIGenomeACS (VBI Genome Annotation and Comparison System) is a genome annotation and comparison system for prokaryotes and eukaryotes. It has been developed by the Virginia Bioinformatics Institute's (VBI) Cyberinfrastructure Group (CIG) as part of the Pathogen Portal (PathPort) project. Backed by a scalable genome relational database VBIGenomeDB and(More)
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