#### Filter Results:

- Full text PDF available (6)

#### Publication Year

2010

2018

- This year (3)
- Last 5 years (9)
- Last 10 years (14)

#### Publication Type

#### Co-author

#### Journals and Conferences

Learn More

- Anne Berry, Romain Pogorelcnik, GeneviÃ¨ve Simonet
- Discrete Applied Mathematics
- 2014

We define an atom tree of a graph as a generalization of a clique tree: its nodes are the atoms obtained by clique minimal separator decomposition, and its edges correspond to the clique minimalâ€¦ (More)

- MÃ©lanie Rigal, Claude Becker, +5 authors Olivier Mathieu
- Proceedings of the National Academy of Sciencesâ€¦
- 2016

Genes and transposons can exist in variable DNA methylation states, with potentially differential transcription. How these epialleles emerge is poorly understood. Here, we show that crossing anâ€¦ (More)

- Anne Berry, Romain Pogorelcnik, GeneviÃ¨ve Simonet
- Algorithms
- 2010

This paper is a review which presents and explains the decomposition by clique minimal separators, which is a promising tool for representing and decomposing experimental data. The pace is leisurely,â€¦ (More)

- Pierre-Alain Jachiet, Romain Pogorelcnik, Anne Berry, Philippe Lopez, Eric Bapteste
- Bioinformatics
- 2013

MOTIVATION
Gene fusion is an important evolutionary process. It can yield valuable information to infer the interactions and functions of proteins. Fused genes have been identified as non-transitiveâ€¦ (More)

- Ayhan Kocer, Joelle Henry-Berger, +11 authors JoÃ«l R. Drevet
- Free radical biology & medicine
- 2015

Normal embryo and foetal development as well as the health of the progeny are mostly dependent on gamete nuclear integrity. In the present study, in order to characterize more precisely oxidative DNAâ€¦ (More)

- Anne Berry, Romain Pogorelcnik
- Inf. Process. Lett.
- 2011

We present a simple unified algorithmic process which uses either LexBFS or MCS on a chordal graph to generate the minimal separators and the maximal cliques in linear time in a single pass.

- Anne Berry, Romain Pogorelcnik, Alain Sigayret
- CLA
- 2011

A concept (or Galois) lattice is built on a binary relation; this relation can be represented by a bipartite graph. We explain how we can use the graph tool of clique minimal separator decompositionâ€¦ (More)

- Phillip George, Silke Jensen, +5 authors Igor V. Sharakhov
- Epigenetics & Chromatin
- 2015

Specific genomic loci, termed Piwi-interacting RNA (piRNA) clusters, manufacture piRNAs that serve as guides for the inactivation of complementary transposable elements (TEs). The piRNA pathway hasâ€¦ (More)

We explain how to organize the atoms resulting from clique minimal separator decomposition into a metagraph which we call the atom graph, and give an efficient recursive algorithm to compute thisâ€¦ (More)

- Marie-Elisa Pinson, Romain Pogorelcnik, Franck Court, Philippe Arnaud, Catherine Vaurs-BarriÃ¨re
- Bioinformatics
- 2018

Summary
L1 Chimeric Transcripts (LCTs) are initiated by repeated LINE-1 element antisense promoters and include the L1 5'UTR sequence in antisense orientation followed by the adjacent genomic region.â€¦ (More)