Roberto Petronzio

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Several neurodegenerative diseases such as Alzheimer's, Parkinson's, and Huntington's diseases are associated with amyloid fibrils formed by different polypeptides. We probe the structure and stability of oligomers of different sizes of the fragment Abeta(16-22) of the Alzheimer beta-amyloid peptide using atomic-detail molecular dynamics simulations with(More)
Many scientific computations need multi-node parallelism for matching up both space (memory) and time (speed) ever-increasing requirements. The use of GPUs as accelerators introduces yet another level of complexity for the programmer and may potentially result in large overheads due to the complex memory hierarchy. Additionally, top-notch problems may(More)
We present the current status of APENet, our custom 3-dimensional interconnect architecture for PC clusters environment. We report some micro-benchmarks on our recent large installation as well as new developments on the software and hardware side. The low level device driver has been reworked by following a custom hardware RDMA architecture, and MPICH-VMI,(More)
We compute charm and bottom quark masses in the quenched approximation and in the continuum limit of lattice QCD. We make use of a step scaling method, previously introduced to deal with two scale problems, that allows to keep the lattice cutoff always greater than the quark mass. We determine the RGI quark masses and make the connection to the M S scheme.(More)
Developed by the APE group, APENet is a new high speed, low latency, 3-dimensional interconnect architecture optimized for PC clusters running LQCD-like numerical applications. The hardware implementation is based on a single PCI-X 133MHz network interface card hosting six independent bi-directional channels with a peak bandwidth of 676 MB/s each direction.(More)
We make a quenched lattice simulation of hadron spectroscopy at β = 6.2 with the Wilson action non-perturbatively improved. With respect to the unim-proved case, the estimate of the lattice spacing is less influenced by the choice of input hadron masses. We study also the effects of using an improved quark mass in the fits to the dependence of hadron masses(More)
Summary form only given. We present APENet, a new high speed, low latency, 3-dimensional interconnect architecture optimized for PC clusters running LQCD-like numerical applications. The hardware implementation is based on a single PCI-X 133MHz network interface card hosting six independent bidirectional channels with a peak bandwidth of 676 MB/s each(More)