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The RAST Server: Rapid Annotations using Subsystems Technology
BackgroundThe number of prokaryotic genome sequences becoming available is growing steadily and is growing faster than our ability to accurately annotate them.DescriptionWe describe a fully automatedExpand
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The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes
TLDR
The open-source metagenomics RAST service provides a new paradigm for the annotation and analysis of metagenomes. Expand
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The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
TLDR
In 2004, the SEED (http://pubseed.org/) was created to provide consistent and accurate genome annotations across thousands of genomes and as a platform for discovering and developing de novo annotations. Expand
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The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes
The release of the 1000th complete microbial genome will occur in the next two to three years. In anticipation of this milestone, the Fellowship for Interpretation of Genomes (FIG) launched theExpand
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Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center
TLDR
The Pathosystems Resource Integration Center (PATRIC) is the bacterial Bioinformatics Resource Center (https://www.patricbrc.org). Expand
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PATRIC, the bacterial bioinformatics database and analysis resource
TLDR
The Pathosystems Resource Integration Center (PATRIC) is the all-bacterial Bioinformatics Resource Center (BRC) (http://www.patricbrc.org). Expand
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RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
TLDR
The RAST (Rapid Annotation using Subsystem Technology) annotation engine was built in 2008 to annotate bacterial and archaeal genomes. Expand
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SEED Servers: High-Performance Access to the SEED Genomes, Annotations, and Metabolic Models
The remarkable advance in sequencing technology and the rising interest in medical and environmental microbiology, biotechnology, and synthetic biology resulted in a deluge of published microbialExpand
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KBase: The United States Department of Energy Systems Biology Knowledgebase
Author(s): Arkin, Adam P; Cottingham, Robert W; Henry, Christopher S; Harris, Nomi L; Stevens, Rick L; Maslov, Sergei; Dehal, Paramvir; Ware, Doreen; Perez, Fernando; Canon, Shane; Sneddon, MichaelExpand
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Antimicrobial Resistance Prediction in PATRIC and RAST
The emergence and spread of antimicrobial resistance (AMR) mechanisms in bacterial pathogens, coupled with the dwindling number of effective antibiotics, has created a global health crisis. BeingExpand
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