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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
DAVID bioinformatics resources consists of an integrated biological knowledgebase and analytic tools aimed at systematically extracting biological meaning from large gene/protein lists. This protocolExpand
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Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
TLDR
We present a survey of bioinformatics enrichment tools that are currently available in the community. Expand
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DAVID: Database for Annotation, Visualization, and Integrated Discovery
The distributed nature of biological knowledge poses a major challenge to the interpretation of genome-scale datasets, including those derived from microarray and proteomic studies. This reportExpand
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Identifying biological themes within lists of genes with EASE
EASE is a customizable software application for rapid biological interpretation of gene lists that result from the analysis of microarray, proteomics, SAGE and other high-throughput genomic data. TheExpand
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DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists
TLDR
The DAVID Bioinformatics Resources consists of the DAVID Knowledgebase and five integrated, web-based functional annotation tool suites:the DAVID Gene Functional Classification Tool, the DAVIDs Functional Annotation Tool, a linear searching tool, the Fuzzy Gene-Term Heat Map Viewer and a Pathogen Genome Browser. Expand
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The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists
The DAVID Gene Functional Classification Tool http://david.abcc.ncifcrf.gov uses a novel agglomeration algorithm to condense a list of genes or associated biological terms into organized classes ofExpand
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DAVID-WS: a stateful web service to facilitate gene/protein list analysis
TLDR
A web-based online bioinformatics resource that aims to provide tools for the functional interpretation of large lists of genes/proteins. Expand
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Extracting Biological Meaning from Large Gene Lists with DAVID
High‐throughput genomics screening studies, such as microarray, proteomics, etc., often result in large, “interesting” gene lists, ranging in size from hundreds to thousands of genes. Given theExpand
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DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis
TLDR
The DAVID Knowledgebase is built around the DAVID Gene Concept, a single-linkage method to agglomerate tens of millions of gene/protein identifiers from a variety of public genomic resources into DAVID gene clusters. Expand
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Evaluation of gene expression measurements from commercial microarray platforms.
Multiple commercial microarrays for measuring genome-wide gene expression levels are currently available, including oligonucleotide and cDNA, single- and two-channel formats. This study reports onExpand
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