• Publications
  • Influence
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
TLDR
By following this protocol, investigators are able to gain an in-depth understanding of the biological themes in lists of genes that are enriched in genome-scale studies.
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
TLDR
The survey will help tool designers/developers and experienced end users understand the underlying algorithms and pertinent details of particular tool categories/tools, enabling them to make the best choices for their particular research interests.
DAVID: Database for Annotation, Visualization, and Integrated Discovery
TLDR
DAMID is a web-accessible program that integrates functional genomic annotations with intuitive graphical summaries that assists in the interpretation of genome-scale datasets by facilitating the transition from data collection to biological meaning.
Identifying biological themes within lists of genes with EASE
TLDR
EASE is a customizable software application for rapid biological interpretation of gene lists that result from the analysis of microarray, proteomics, SAGE and other high-throughput genomic data and is robust to varying methods of normalization, intensity calculation and statistical selection of genes.
The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists
TLDR
The DAVID Gene Functional Classification Tool uses a novel agglomeration algorithm to condense a list of genes or associated biological terms into organized classes of related genes or biology, called biological modules, for efficient interpretation of gene lists in a network context.
DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists
TLDR
The expanded DAVID Knowledgebase now integrates almost all major and well-known public bioinformatics resources centralized by the DAVID Gene Concept, a single-linkage method to agglomerate tens of millions of diverse gene/protein identifiers and annotation terms from a variety of public bio informatics databases.
DAVID-WS: a stateful web service to facilitate gene/protein list analysis
TLDR
DAVID, the database for annotation, visualization and integrated discovery (DAVID), is a web-based online bioinformatics resource that aims to provide tools for the functional interpretation of large lists of genes/proteins.
DAVID: Database for Annotation, Visualization, and Integrated Discovery
TLDR
Analysis results and graphical displays remain dynamically linked to primary data and external data repositories, thereby furnishing in-depth as well as broad-based data coverage.
DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis
TLDR
The DAVID Knowledgebase is designed to facilitate high throughput gene functional analysis, and not only provides the quick accessibility to a wide range of heterogeneous annotation data in a centralized location, but also enriches the level of biological information for an individual gene.
Extracting Biological Meaning from Large Gene Lists with DAVID
  • Da Wei Huang, B. Sherman, R. Lempicki
  • Biology
    Current protocols in bioinformatics
  • 1 September 2009
TLDR
This unit will describe step‐by‐step procedures to use DAVID tools, as well as a brief rationale and key parameters in the DAVID analysis.
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