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The minimum information about a genome sequence (MIGS) specification
TLDR
Here, the minimum information about a genome sequence (MIGS) specification is introduced with the intent of promoting participation in its development and discussing the resources that will be required to develop improved mechanisms of metadata capture and exchange.
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Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
TLDR
To establish a unified standard for describing sequence data and to provide a single point of entry for the scientific community to access and learn about GSC checklists, the minimum information about any (x) sequence is presented (MIxS).
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Minimum Information about a Biosynthetic Gene cluster.
TLDR
This work proposes the Minimum Information about a Biosynthetic Gene cluster (MIBiG) data standard, to facilitate consistent and systematic deposition and retrieval of data on biosynthetic gene clusters.
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The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters
TLDR
The anti SMASH database is developed, a simple but highly useful new resource to browse antiSMASH-annotated BGCs in the currently 3907 bacterial genomes in the database and perform advanced search queries combining multiple search criteria.
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The Global Genome Biodiversity Network (GGBN) Data Standard specification
TLDR
The new data standard presented here build upon existing standards commonly used within the community extending them with the capability to exchange data on tissue, environmental and DNA sample as well as sequences.
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The ocean sampling day consortium
TLDR
This commentary outlines the establishment, function and aims of the Ocean Sampling Day Consortium and describes the vision for a sustainable study of marine microbial communities and their embedded functional traits.
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JCoast – A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes
TLDR
JCoast combines all functions required for the mining, annotation, and interpretation of (meta)genomic data and allows the user to easily take advantage of advanced back-end database structures by providing a programming and graphical user interface to answer biological questions.
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The Genomic Standards Consortium
TLDR
A short history of the GSC is provided, an overview of its range of current activities are provided, and a call for the scientific community to join forces to improve the quality and quantity of contextual information about the authors' public collections of genomes, metagenomes, and marker gene sequences is made.
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A standard operating procedure for phylogenetic inference (SOPPI) using (rRNA) marker genes.
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A standard MIGS/MIMS compliant XML Schema: toward the development of the Genomic Contextual Data Markup Language (GCDML).
TLDR
The need for a sample-centric, strongly-typed schema, which will provide a diverse set of descriptors for describing the exact origin and processing of a biological sample, from sampling to sequencing, and subsequent analysis is described.
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