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QIIME allows analysis of high-throughput community sequencing data
- J. Caporaso, Justin Kuczynski, R. Knight
- BusinessNature Methods
- 1 May 2010
TLDR
UCHIME improves sensitivity and speed of chimera detection
- R. Edgar, B. Haas, J. Clemente, C. Quince, R. Knight
- BiologyBioinform.
- 23 June 2011
TLDR
UniFrac: a New Phylogenetic Method for Comparing Microbial Communities
- C. Lozupone, R. Knight
- Environmental ScienceApplied and Environmental Microbiology
- 1 December 2005
TLDR
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
- M. Langille, Jesse R. Zaneveld, C. Huttenhower
- BiologyNature Biotechnology
- 25 August 2013
TLDR
PyNAST: a flexible tool for aligning sequences to a template alignment
- J. Caporaso, K. Bittinger, F. Bushman, T. DeSantis, G. Andersen, R. Knight
- Computer ScienceBioinform.
- 13 November 2009
Motivation: The Nearest Alignment Space Termination (NAST) tool is commonly used in sequence-based microbial ecology community analysis, but due to the limited portability of the original…
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
- E. Bolyen, J. Rideout, J. Caporaso
- MedicineNature Biotechnology
- 1 August 2019
TLDR
A core gut microbiome in obese and lean twins
- P. Turnbaugh, M. Hamady, J. Gordon
- BiologyNature
- 24 October 2008
TLDR
Human gut microbiome viewed across age and geography
- Tanya Yatsunenko, F. Rey, J. Gordon
- Biology, MedicineNature
- 22 March 2012
TLDR
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
- J. Caporaso, C. Lauber, R. Knight
- BiologyThe ISME Journal
- 8 March 2012
TLDR
Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes
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