Pramod Mudrakarta

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We present Oqtans, an open-source workbench for quantitative transcriptome analysis, that is integrated in Galaxy. Its distinguishing features include customizable computational workflows and a modular pipeline architecture that facilitates comparative assessment of tool and data quality. Oqtans integrates an assortment of machine learning-powered tools(More)
Motivation: Recent advances in high-throughput cDNA sequencing (RNA-Seq) technology have revolutionized transcriptome studies. A major motivation for RNA-Seq is to map the structure of expressed transcripts at nucleotide resolution. With accurate computational tools for transcript reconstruction, this technology may also become useful for genome(More)
We present an open-source workbench integrated in the Galaxy framework that enables researchers to set up a computational pipeline, called Oqtans, for quantitative transcriptome analysis. Its distinguishing features include a modular pipeline architecture, which facilitates comparative assessment of tool and data quality. Oqtans integrates, for the first(More)
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