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We present a method to label and trace the lineage of multiple neural progenitors simultaneously in vertebrate animals via multiaddressable genome-integrative color (MAGIC) markers. We achieve permanent expression of combinatorial labels from new Brainbow transgenes introduced in embryonic neural progenitors with electroporation of transposon vectors. In(More)
TCGA-Assembler is fully compatible with Firehose and can directly process data files downloaded from Firehose. TCGA-Assembler will remain freely available and open source. In the future, more dataprocessing and analysis functions will be continuously added to TCGA-Assembler on the basis of user feedback and new research needs. We expect that TCGA-Assembler(More)
We study both experimentally and theoretically the generation of photon pairs by spontaneous four-wave mixing (SFWM) in standard birefringent optical fibers. The ability to produce a range of two-photon spectral states, from highly correlated (entangled) to completely factorable, by means of cross-polarized birefringent phase matching, is explored. A simple(More)
We demonstrate a simple method for mapping optical aberrations with 3D resolution within thick samples. The method relies on the local measurement of the variation in image quality with externally applied aberrations. We discuss the accuracy of the method as a function of the signal strength and of the aberration amplitude and we derive the achievable(More)
Nonlinear microscopy can be used to probe the intrinsic optical properties of biological tissues. Using femtosecond pulses, third-harmonic generation (THG) and four-wave mixing (FWM) signals can be efficiently produced and detected simultaneously. Both signals probe a similar parameter, i.e. the real part of the third-order nonlinear susceptibility χ((3)).(More)
We study theoretically and numerically third-harmonic generation (THG) from model geometries (interfaces, slabs, periodic media) illuminated by Bessel beams produced by focusing an annular intensity profile. Bessel beams exhibit a phase and intensity distribution near focus different from Gaussian beams, resulting in distinct THG phase matching properties(More)
This Article contains typographical errors. In the Results and Discussion section under subheading 'Properties of second-harmonic generation imaging with Bessel beam excitation' , " Interestingly, in the case of SHG, if all contributions scattered by the sample along the optical axis interfere in a constructive manner, the signal should scale as ρ z × 1/ρ z(More)
Second-harmonic generation (SHG) is the most specific label-free indicator of collagen accumulation in widespread pathologies such as fibrosis, and SHG-based measurements hold important potential for biomedical analyses. However, efficient collagen SHG scoring in histological slides is hampered by the limited depth-of-field of usual nonlinear microscopes(More)
Two-photon imaging of endogenous fluorescence can provide physiological and metabolic information from intact tissues. However, simultaneous imaging of multiple intrinsic fluorophores, such as nicotinamide adenine dinucleotide(phosphate) (NAD(P)H), flavin adenine dinucleotide (FAD) and retinoids in living systems is generally hampered by sequential(More)
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