Philippe Gambette
LIGM (UMR 8049), UPEM, CNRS, ENPC, ESIEE Paris, Université Paris-Est, Marne-la-Vallée, 77454, Paris, France.
Author pages are created from data sourced from our academic publisher partnerships and public sources.
- Publications
- Influence
Quartets and Unrooted phylogenetic Networks
- Philippe Gambette, V. Berry, C. Paul
- Computer Science, Mathematics
- J. Bioinform. Comput. Biol.
- 23 July 2012
Phylogenetic networks were introduced to describe evolution in the presence of exchanges of genetic material between coexisting species or individuals. Split networks in particular were introduced as… Expand
Computing galled networks from real data
- D. Huson, Regula Rupp, V. Berry, Philippe Gambette, C. Paul
- Computer Science, Medicine
- Bioinform.
- 27 May 2009
Motivation: Developing methods for computing phylogenetic networks from biological data is an important problem posed by molecular evolution and much work is currently being undertaken in this area.… Expand
Visualising a Text with a Tree Cloud
- Philippe Gambette, J. Véronis
- Computer Science
- 13 March 2009
Tag clouds have gained popularity over the internet to provide a quick overview of the content of a website or a text. We introduce a new visualisation which displays more information: the tree… Expand
The Structure of Level-k Phylogenetic Networks
- Philippe Gambette, V. Berry, C. Paul
- Computer Science
- CPM
- 18 June 2009
Evolution is usually described as a phylogenetic tree, but due to some exchange of genetic material, it can be represented as a phylogenetic network which has an underlying tree structure. The notion… Expand
Rearrangement moves on rooted phylogenetic networks
- Philippe Gambette, L. Iersel, M. Jones, Manuel Lafond, Fabio Pardi, Céline Scornavacca
- Computer Science, Biology
- PLoS Comput. Biol.
- 1 August 2017
Phylogenetic tree reconstruction is usually done by local search heuristics that explore the space of the possible tree topologies via simple rearrangements of their structure. Tree rearrangement… Expand
On encodings of phylogenetic networks of bounded level
- Philippe Gambette, K. Huber
- Mathematics, Biology
- Journal of mathematical biology
- 23 June 2009
Phylogenetic networks have now joined phylogenetic trees in the center of phylogenetics research. Like phylogenetic trees, such networks canonically induce collections of phylogenetic trees,… Expand
On Restrictions of Balanced 2-Interval Graphs
- Philippe Gambette, S. Vialette
- Computer Science, Biology
- WG
- 12 April 2007
The class of 2-interval graphs has been introduced for modelling scheduling and allocation problems, and more recently for specific bioinformatics problems. Some of those applications imply… Expand
Uprooted Phylogenetic Networks
- Philippe Gambette, K. Huber, G. Scholz
- Medicine, Mathematics
- Bulletin of mathematical biology
- 31 July 2017
The need for structures capable of accommodating complex evolutionary signals such as those found in, for example, wheat has fueled research into phylogenetic networks. Such structures generalize the… Expand
Clust&See: A Cytoscape plugin for the identification, visualization and manipulation of network clusters
- L. Spinelli, Philippe Gambette, +6 authors M. Brun
- Computer Science, Medicine
- Biosyst.
- 1 August 2013
BACKGROUND AND SCOPE
Large networks, such as protein interaction networks, are extremely difficult to analyze as a whole. We developed Clust&See, a Cytoscape plugin dedicated to the identification,… Expand
Locating a Tree in a Phylogenetic Network in Quadratic Time
- Philippe Gambette, Andreas D. M. Gunawan, A. Labarre, S. Vialette, L. Zhang
- Computer Science, Mathematics
- RECOMB
- 11 February 2015
A fundamental problem in the study of phylogenetic networks is to determine whether or not a given phylogenetic network contains a given phylogenetic tree. We develop a quadratic-time algorithm for… Expand