MIMIC-III, a freely accessible critical care database
- A. Johnson, T. Pollard, R. Mark
- MedicineScientific Data
- 1 May 2016
MIMIC-III (‘Medical Information Mart for Intensive Care’) is a large, single-center database comprising information relating to patients admitted to critical care units at a large tertiary care…
Is BERT Really Robust? A Strong Baseline for Natural Language Attack on Text Classification and Entailment
- Di Jin, Zhijing Jin, Joey Tianyi Zhou, Peter Szolovits
- Computer ScienceAAAI Conference on Artificial Intelligence
- 27 July 2019
TextFooler is presented, a simple but strong baseline to generate adversarial text that outperforms previous attacks by success rate and perturbation rate, and is utility-preserving and efficient, which generates adversarialtext with computational complexity linear to the text length.
What Is a Knowledge Representation?
- Randall Davis, H. Shrobe, Peter Szolovits
- PhilosophyThe AI Magazine
- 15 March 1993
It is argued that keeping in mind all five of these roles that a representation plays provides a usefully broad perspective that sheds light on some longstanding disputes and can invigorate both research and practice in the field.
Is BERT Really Robust? Natural Language Attack on Text Classification and Entailment
- Di Jin, Zhijing Jin, Joey Tianyi Zhou, Peter Szolovits
- Computer SciencearXiv.org
- 27 July 2019
The TextFooler is presented, a general attack framework, to generate natural adversarial texts that outperforms state-of-the-art attacks in terms of success rate and perturbation rate.
De-identification of patient notes with recurrent neural networks
- Franck Dernoncourt, Ji Young Lee, Özlem Uzuner, Peter Szolovits
- Computer Science, MedicineJ. Am. Medical Informatics Assoc.
- 10 June 2016
The first de-identification system based on artificial neural networks (ANNs), which requires no handcrafted features or rules, unlike existing systems, is introduced, which outperforms the state-of-the-art systems.
Viewpoint Paper: Evaluating the State-of-the-Art in Automatic De-identification
- Özlem Uzuner, Yuan Luo, Peter Szolovits
- Computer ScienceJ. Am. Medical Informatics Assoc.
- 1 September 2007
An overview of this de-identification challenge is provided, the data and the annotation process are described, the evaluation metrics are explained, the nature of the systems that addressed the challenge are discussed, the results of received system runs are analyzed, and directions for future research are identified.
NeuroNER: an easy-to-use program for named-entity recognition based on neural networks
- Franck Dernoncourt, Ji Young Lee, Peter Szolovits
- Computer ScienceConference on Empirical Methods in Natural…
- 16 May 2017
NeuroNER is an easy-to-use named-entity recognition tool based on ANNs that can annotate entities using a graphical web-based user interface (BRAT) and be used to train an ANN, which in turn predict entities’ locations and categories in new texts.
Clinically Accurate Chest X-Ray Report Generation
- Guanxiong Liu, T. Hsu, M. Ghassemi
- Computer ScienceMachine Learning in Health Care
- 4 April 2019
A domain-aware automatic chest X-ray radiology report generation system which first predicts what topics will be discussed in the report, then conditionally generates sentences corresponding to these topics, and is fine-tuned using reinforcement learning.
What Disease does this Patient Have? A Large-scale Open Domain Question Answering Dataset from Medical Exams
- Di Jin, Eileen Pan, Nassim Oufattole, W. Weng, Hanyi Fang, Peter Szolovits
- Computer ScienceApplied Sciences
- 28 September 2020
This work presents the first free-form multiple-choice OpenQA dataset for solving medical problems, MedQA, collected from the professional medical board exams, and implements both rule-based and popular neural methods by sequentially combining a document retriever and a machine comprehension model.
Automated de-identification of free-text medical records
- Ishna Neamatullah, M. Douglass, G. Clifford
- MedicineBMC Medical Informatics Decis. Mak.
- 1 July 2008
An automated Perl-based de-identification software package that is generally usable on most free-text medical records, e.g., nursing notes, discharge summaries, X-ray reports, etc, and is sufficiently generalized and can be customized to handle text files of any format is described.
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