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The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae
We present the YEAst Search for Transcriptional Regulators And Consensus Tracking (YEASTRACT; ) database, a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae.Expand
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PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods
BackgroundWith the decrease of DNA sequencing costs, sequence-based typing methods are rapidly becoming the gold standard for epidemiological surveillance. These methods provide reproducible andExpand
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The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae
The YEASTRACT (http://www.yeastract.com) information system is a tool for the analysis and prediction of transcription regulatory associations in Saccharomyces cerevisiae. Last updated in June 2013,Expand
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YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface
The YEAst Search for Transcriptional Regulators And Consensus Tracking (YEASTRACT) information system (http://www.yeastract.com) was developed to support the analysis of transcription regulatoryExpand
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YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae
The Yeast search for transcriptional regulators and consensus tracking (YEASTRACT) information system (www.yeastract.com) was developed to support the analysis of transcription regulatoryExpand
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YEASTRACT: an upgraded database for the analysis of transcription regulatory networks in Saccharomyces cerevisiae
Abstract The YEAst Search for Transcriptional Regulators And Consensus Tracking (YEASTRACT—www.yeastract.com) information system has been, for 11 years, a key tool for the analysis and prediction ofExpand
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Efficient parameter search for qualitative models of regulatory networks using symbolic model checking
MOTIVATION Investigating the relation between the structure and behavior of complex biological networks often involves posing the question if the hypothesized structure of a regulatory network isExpand
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Model Checking to Assess T-Helper Cell Plasticity
Computational modeling constitutes a crucial step toward the functional understanding of complex cellular networks. In particular, logical modeling has proven suitable for the dynamical analysis ofExpand
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The PathoYeastract database: an information system for the analysis of gene and genomic transcription regulation in pathogenic yeasts
We present the PATHOgenic YEAst Search for Transcriptional Regulators And Consensus Tracking (PathoYeastract - http://pathoyeastract.org) database, a tool for the analysis and prediction ofExpand
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Temporal logic patterns for querying dynamic models of cellular interaction networks
MOTIVATION Models of the dynamics of cellular interaction networks have become increasingly larger in recent years. Formal verification based on model checking provides a powerful technology to keepExpand
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