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Stacks: an analysis tool set for population genomics
Massively parallel short‐read sequencing technologies, coupled with powerful software platforms, are enabling investigators to analyse tens of thousands of genetic markers. This wealth of data isExpand
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Stacks: Building and Genotyping Loci De Novo From Short-Read Sequences
Advances in sequencing technology provide special opportunities for genotyping individuals with speed and thrift, but the lack of software to automate the calling of tens of thousands of genotypesExpand
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Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags
Next-generation sequencing technology provides novel opportunities for gathering genome-scale sequence data in natural populations, laying the empirical foundation for the evolving field ofExpand
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Genome-wide genetic marker discovery and genotyping using next-generation sequencing
The advent of next-generation sequencing (NGS) has revolutionized genomic and transcriptomic approaches to biology. These new sequencing tools are also valuable for the discovery, validation andExpand
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Harnessing the power of RADseq for ecological and evolutionary genomics
High-throughput techniques based on restriction site-associated DNA sequencing (RADseq) are enabling the low-cost discovery and genotyping of thousands of genetic markers for any species, includingExpand
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Genomics and the future of conservation genetics
We will soon have complete genome sequences from thousands of species, as well as from many individuals within species. This coming explosion of information will transform our understanding of theExpand
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Genomics and the origin of species
Speciation is a fundamental evolutionary process, the knowledge of which is crucial for understanding the origins of biodiversity. Genomic approaches are an increasingly important aspect of thisExpand
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Harnessing genomics for delineating conservation units.
Genomic data have the potential to revolutionize the delineation of conservation units (CUs) by allowing the detection of adaptive genetic variation, which is otherwise difficult for rare, endangeredExpand
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Resolving postglacial phylogeography using high-throughput sequencing
The distinction between model and nonmodel organisms is becoming increasingly blurred. High-throughput, second-generation sequencing approaches are being applied to organisms based on theirExpand
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Understanding The Evolution And Stability Of The G-Matrix
Abstract The G-matrix summarizes the inheritance of multiple, phenotypic traits. The stability and evolution of this matrix are important issues because they affect our ability to predict how theExpand
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