Pascal Ballet

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In this article, we present a parallel image processing system based on the concept of reactive agents. Our system lies in the oRis language, which allows to describe ÿnely and simply the agents' behaviors to detect image features. We also present a method of segmentation using a multi-agent system, and two biological applications made with oRis. The(More)
The relevance of biological materials and processes to computing-alias bioputing-has been explored for decades. These materials include DNA, RNA and proteins, while the processes include transcription, translation, signal transduction and regulation. Recently, the use of bacteria themselves as living computers has been explored but this use generally falls(More)
New concepts may prove necessary to profit from the avalanche of sequence data on the genome, transcriptome, proteome and interactome and to relate this information to cell physiology. Here, we focus on the concept of large activity-based structures, or hyperstructures, in which a variety of types of molecules are brought together to perform a function. We(More)
—In biology, recent techniques in confocal mi-croscopy have produced experimental data which highlights the importance of cellular dynamics in the evolution of biological shapes. Thus, to understand the mechanisms underlying the morphogenesis of multi-cellular organisms, we study this cellular dynamic system in terms of its properties: cell multiplication ,(More)
The Cellular Potts Model (CPM) is a cellular automaton (CA) allowing to model the morphogenesis of living cells. It characterizes a cell by its volume, surface and type. The CPM has already been used to simulate several models of cell self-organization. However, the cell shape is under-constraint i.e. it does not implies a unique shape. We propose a(More)
In the context of tissue morphogenesis study, in silico simulations can be seen as experiments in a virtual lab bench. Such simulations can facilitate the comprehension of a system, the test of hypotheses or the incremental refining of a model and its parameters. In silico simulations must be efficient and provide the possibility to simulate large tissues,(More)
The relevance of certain biological materials and processes to computing or bioputing has been explored for decades. These materials include DNA, RNA, enzymes and other proteins whilst the processes include transcription and translation (as well as the control of these processes by protein and by small RNA) and signal transduction. Recently, other(More)