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Universal primers for amplification of three non-coding regions of chloroplast DNA
- P. Taberlet, L. Gielly, G. Pautou, J. Bouvet
- Biology, Environmental SciencePlant Molecular Biology
- 1 November 1991
Six primers for the amplification of three non-coding regions of chloroplast DNA via the polymerase chain reaction (PCR) have been designed and worked for most species tested, which means that they may be used to study the population biology and evolution of plants.
Comparative phylogeography and postglacial colonization routes in Europe
- P. Taberlet, L. Fumagalli, A. WUST‐SAUCY, J. Cosson
- Biology, Environmental ScienceMolecular ecology
- 1 April 1998
A Brooks parsimony analysis produced an unrooted area phylogram, showing that: (i) the northern regions were colonized generally from the Iberic and Balkanic refugia; and (ii) the Italian lineages were often isolated due to the presence of the Alpine barrier.
Estimating the probability of identity among genotypes in natural populations: cautions and guidelines
An equation for P(ID) between sibs is introduced that provides an estimator that can be used as a conservative upper bound for the probability of observing identical multilocus genotypes between two individuals sampled from a population.
How to track and assess genotyping errors in population genetics studies
- A. Bonin, E. Bellemain, P. Bronken Eidesen, F. Pompanon, C. Brochmann, P. Taberlet
- BiologyMolecular ecology
- 1 November 2004
Four case studies representing a large variety of population genetics investigations differing in their sampling strategies, in the type of organism studied (plant or animal) and the molecular markers used [microsatellites or amplified fragment length polymorphisms (AFLPs), and the estimated genotyping error rate are considered.
Landscape genetics: combining landscape ecology and population genetics
Genotyping errors: causes, consequences and solutions
A protocol for estimating error rates is proposed and it is recommended that these measures be systemically reported to attest the reliability of published genotyping studies.
Reliable genotyping of samples with very low DNA quantities using PCR.
An experimental procedure using PCR that provides a reliable genotype at a microsatellite locus using only a few picograms of template DNA is identified and should be systematically used when genotyping nuclear loci of ancient or forensic samples, museum specimens and hair or feces of free ranging animals.
Species detection using environmental DNA from water samples
A novel approach, based on the limited persistence of DNA in the environment, to detect the presence of a species in fresh water, using specific primers that amplify short mitochondrial DNA sequences to track the existence of a frog in controlled environments and natural wetlands.
Who is eating what: diet assessment using next generation sequencing
- F. Pompanon, B. Deagle, W. Symondson, David S. Brown, S. Jarman, P. Taberlet
- Environmental ScienceMolecular ecology
- 1 April 2012
The power and pitfalls of NGS diet methods are reviewed, the critical factors to take into account when choosing or designing a suitable barcode are presented and the validation of data accuracy including the viability of producing quantitative data is discussed.
The power and promise of population genomics: from genotyping to genome typing
- G. Luikart, P. England, D. Tallmon, S. Jordan, P. Taberlet
- BiologyNature Reviews Genetics
- 1 December 2003
The most useful contribution of the genomics model to population genetics will be improving inferences about population demography and evolutionary history.