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Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
- T. DeSantis, P. Hugenholtz, G. Andersen
- BiologyApplied and Environmental Microbiology
- 1 February 2006
TLDR
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.
- Donovan H. Parks, Michael Imelfort, Connor T. Skennerton, P. Hugenholtz, G. Tyson
- Biology, EngineeringGenome research
- 1 July 2015
TLDR
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
- D. McDonald, M. Price, P. Hugenholtz
- BiologyThe ISME Journal
- 1 December 2011
TLDR
STAMP: statistical analysis of taxonomic and functional profiles
- Donovan H. Parks, G. Tyson, P. Hugenholtz, R. Beiko
- Computer ScienceBioinform.
- 1 November 2014
TLDR
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
- Donovan H. Parks, M. Chuvochina, P. Hugenholtz
- BiologyNature Biotechnology
- 27 August 2018
TLDR
Impact of Culture-Independent Studies on the Emerging Phylogenetic View of Bacterial Diversity
- P. Hugenholtz, B. Goebel, N. Pace
- BiologyJournal of bacteriology
- 15 September 1998
Our perspective on microbial diversity has improved enormously over the past few decades. In large part this has been due to molecular phylogenetic studies that objectively relate organisms.…
Community structure and metabolism through reconstruction of microbial genomes from the environment
- G. Tyson, J. Chapman, J. Banfield
- BiologyNature
- 4 March 2004
TLDR
Bellerophon: a program to detect chimeric sequences in multiple sequence alignments
- T. Huber, G. Faulkner, P. Hugenholtz
- BiologyBioinform.
- 22 September 2004
TLDR
Insights into the phylogeny and coding potential of microbial dark matter
- Christian Rinke, P. Schwientek, T. Woyke
- BiologyNature
- 25 July 2013
TLDR
Defining the core Arabidopsis thaliana root microbiome
- Derek S. Lundberg, S. Lebeis, J. Dangl
- Environmental Science, BiologyNature
- 2 August 2012
TLDR
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