• Publications
  • Influence
The Protein Data Bank
TLDR
The Protein Data Bank [PDB; Berman, Westbrook et al. (2000), Nucleic Acids Res. 28, 235-242; http://www.pdb.org/] is the single worldwide archive of primary structural data of biological macromolecules. Expand
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The FAIR Guiding Principles for scientific data management and stewardship
TLDR
This Comment is the first formal publication of the FAIR Principles, and includes the rationale behind them, and some exemplar implementations in the community. Expand
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Protein structure alignment by incremental combinatorial extension (CE) of the optimal path.
TLDR
A new algorithm is reported which builds an alignment between two protein structures via combinatorial extension of an alignment path defined by aligned fragment pairs (AFPs). Expand
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The RCSB Protein Data Bank: redesigned web site and web services
TLDR
The RCSB Protein Data Bank (RCSB PDB) web site has been redesigned to increase usability and to cater to a larger and more diverse user base. Expand
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ElliPro: a new structure-based tool for the prediction of antibody epitopes
TLDR
We present ElliPro, a web-tool that implements Thornton's method and, together with a residue clustering algorithm, the MODELLER program and the Jmol viewer, allows the prediction and visualization of antibody epitopes in a protein sequence or structure. Expand
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The RCSB Protein Data Bank: new resources for research and education
TLDR
The RCSB Protein Data Bank (RCSB PDB) uses the curated 3D macromolecular data contained in the PDB archive to offer unique methods to access, report and visualize data. Expand
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The RCSB Protein Data Bank: views of structural biology for basic and applied research and education
TLDR
The RCSB Protein Data Bank (RCSB PDB, http://www.rcsb.org) develops deposition, annotation, query, analysis and visualization tools, and educational resources for the use with the PDB archive. Expand
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The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema
TLDR
The Protein Data Bank (PDB) is the central worldwide repository for three-dimensional (3D) structure data of biological macromolecules. Expand
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The Protein Data Bank and the challenge of structural genomics
The PDB has created systems for the processing, exchange, query, and distribution of data that will enable many aspects of high throughput structural genomics.
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SuperTarget and Matador: resources for exploring drug-target relationships
TLDR
We developed a one-stop data warehouse, SuperTarget that integrates drug-related information about medical indication areas, adverse drug effects, drug metabolization, pathways and Gene Ontology terms of the target proteins. Expand
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