Understanding brain function requires monitoring and interpreting the activity of large networks of neurons during behavior. Advances in recording technology are greatly increasing the size and complexity of neural data. Analyzing such data will pose a fundamental bottleneck for neuroscience. We present a library of analytical tools called Thunder built on… (More)
correspondence sists of two excitation laser beams. One beam scans the volume of the brain from the side of a horizontally positioned zebrafish but is rapidly switched off when inside an elliptical exclusion region located over the eye (Fig. 1b). Simultaneously, a second beam scans from the front, to cover the forebrain and the regions between the eyes.… (More)
Increasing the volumetric imaging speed of light-sheet microscopy will improve its ability to detect fast changes in neural activity. Here, a system is introduced for brain-wide imaging of neural activity in the larval zebrafish by coupling structured illumination with cubic phase extended depth-of-field (EDoF) pupil encoding. This microscope enables faster… (More)
The light-sheet microscope with behavior setup. Lasers, control and data acquisition hardware are not shown.