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High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development
Using the latest sequencing and optical mapping technologies, we have produced a high-quality de novo assembly of the apple (Malus domestica Borkh.) genome. Repeat sequences, which represented overExpand
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A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea
BackgroundTransposable elements (TEs) are mobile DNA sequences known as drivers of genome evolution. Their impacts have been widely studied in animals, plants and insects, but little is known aboutExpand
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A high-quality genome sequence of Rosa chinensis to elucidate ornamental traits
Rose is the world’s most important ornamental plant, with economic, cultural and symbolic value. Roses are cultivated worldwide and sold as garden roses, cut flowers and potted plants. Roses areExpand
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Genome-Wide Association Mapping of Flowering and Ripening Periods in Apple
Deciphering the genetic control of flowering and ripening periods in apple is essential for breeding cultivars adapted to their growing environments. We implemented a large Genome-Wide AssociationExpand
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Inhibition of RNA polymerase II allows controlled mobilisation of retrotransposons for plant breeding
BackgroundRetrotransposons play a central role in plant evolution and could be a powerful endogenous source of genetic and epigenetic variability for crop breeding. To ensure genome integrity severalExpand
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A high-quality sequence of Rosa chinensis to elucidate genome structure and ornamental traits
Rose is the world’s most important ornamental plant with economic, cultural and symbolic value. Roses are cultivated worldwide and sold as garden roses, cut flowers and potted plants. Rose has aExpand
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Divergent DNA methylation signatures of juvenile seedlings grafts and adult apple trees
Plants are continuously exposed to environmental perturbations. Outcrossing annual plants can adapt rapidly to these changes via sexual mating and DNA mutations. However, perennial and clonallyExpand
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Bioinformatic analysis of the apple genome and epigenome
Apple is one of the most consumed fruits in the world. Using the latest sequencing (PacBio) and optical mapping (BioNano) technologies, we have generated a high-quality de novo assembly of the appleExpand
Analyse bioinformatique du génome et de l’épigénome du pommier
La pomme est l’un des fruits les plus consommes au monde. En utilisant les dernieres technologies de sequencage (PacBio) et de cartes optiques (BioNano), nous avons genere un assemblage de novo deExpand
Divergent DNA Methylation Signatures of Juvenile Seedlings, Grafts and Adult Apple Trees
The vast majority of previous studies on epigenetics in plants have centered on the study of inheritance of DNA methylation patterns in annual plants. In contrast, perennial plants may have theExpand