Misbah Mubarak

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A high-bandwidth, low-latency interconnect will be a critical component of future exascale systems. The torus network topology, which uses multidimensional network links to improve path diversity and exploit locality between nodes, is a potential candidate for exascale interconnects. The communication behavior of large-scale scientific applications running(More)
This paper presents a preliminary evaluation of TraceR, a trace replay tool built upon the ROSS-based CODES simulation framework. TraceR can be used for predicting network performance and understanding network behavior by simulating messaging on interconnec-tion networks. It addresses two major shortcomings in current network simulators. First, it enables(More)
Fault response strategies are crucial to maintaining performance and availability in HPC storage systems, and the first responsibility of a successful fault response strategy is to detect failures and maintain an accurate view of group membership. This is a nontrivial problem given the unreliable nature of communication networks and other system components.(More)
Accurate analysis of HPC storage system designs is contingent on the use of I/O workloads that are truly representative of expected use. However, I/O analyses are generally bound to specific workload modeling techniques such as synthetic benchmarks or trace replay mechanisms, despite the fact that no single workload modeling technique is appropriate for all(More)
MPI collective operations are a critical and frequently used part of most MPI-based large-scale scientific applications. In previous work, we have enabled the Rensselaer Optimistic Simulation System (ROSS) to predict the performance of MPI point-to-point messaging on high-fidelity million-node network simulations of torus and dragonfly interconnects. The(More)
—With the increasing complexity of today's high-performance computing (HPC) architectures, simulation has become an indispensable tool for exploring the design space of HPC systems—in particular, networks. In order to make effective design decisions, simulations of these systems must possess the following properties: (1) have high accuracy and fidelity, (2)(More)
As the cost of DNA sequencing has decreased, computational biology data processing platforms are experiencing an increasingly large volume of data analysis requests. The metagenomics analysis server MG-RAST at Argonne National Laboratory, a computational biology data processing platform, is receiving several terabytes of data submissions per month. However,(More)
—Distributed object storage architectures have become the de facto standard for high-performance storage in big data, cloud, and HPC computing. Object storage deployments using commodity hardware to reduce costs often employ object replication as a method to achieve data resilience. Repairing object replicas after failure is a daunting task for systems with(More)