The Tree of Life and a New Classification of Bony Fishes
- R. Betancur-R, R. Broughton, G. OrtÃ
- Biology, Environmental SciencePLOS Currents
- 18 April 2013
A comprehensive molecular phylogeny for bony fishes that includes representatives of all major lineages and the order Perciformes, considered by many a polyphyletic taxonomic waste basket, is defined for the first time as a monophyletic group in the global phylogeny.
Genomic variation in 3,010 diverse accessions of Asian cultivated rice
- Wensheng Wang, R. Mauleon, H. Leung
- BiologyNature
- 25 April 2018
Analyses of genetic variation and population structure based on over 3,000 cultivated rice (Oryza sativa) genomes reveal subpopulations that correlate with geographic location and patterns of introgression consistent with multiple rice domestication events.
Rice SNP-seek database update: new SNPs, indels, and queries
- L. Mansueto, Roven Rommel Fuentes, N. Alexandrov
- Computer ScienceNucleic Acids Res.
- 28 November 2016
New genotype query and display features are added for reference assemblies, SNP datasets and indels, and query modules for genotypes, varieties and genes are improved to handle various constraints.
Phylogenetic placement of enigmatic percomorph families (Teleostei: Percomorphaceae).
- Millicent D Sanciangco, K. Carpenter, R. Betancur-R
- BiologyMolecular Phylogenetics and Evolution
- 2016
Extensive Genetic Diversity is Present within North American Switchgrass Germplasm
- Joseph Evans, Millicent D Sanciangco, C. Buell
- Medicine, BiologyThe Plant Genome
- 1 March 2018
This was the largest panel of switchgrass genetic diversity generated to date and there was a genetic bottleneck in upland switchgrass.
A molecular phylogeny of the Grunts (Perciformes: Haemulidae) inferred using mitochondrial and nuclear genes
- Millicent D Sanciangco, L. Rocha, K. Carpenter
- Biology
- 14 July 2011
Results from maximum parsimony, maximum likelihood, and Bayesian analyses show strong support for a monophyletic Haemulidae with the inclusion of Emmelichthyops atlanticus, and suggest that further morphological and molecular studies are needed to revise the limits of several haemulid genera.
Leaf morphology, rather than plant water status, underlies genetic variation of rice leaf rolling under drought
- Andrew J Cal, Millicent D Sanciangco, A. Henry
- Medicine, BiologyPlant, Cell and Environment
- 20 February 2019
The degree of leaf rolling under drought was more affected by leaf morphology than by stomatal conductance, leaf water status, or maintenance of shoot biomass and grain yield, in tropical japonica and aus diversity panels.
Genomic Prediction for Winter Survival of Lowland Switchgrass in the Northern USA
- H. Poudel, Millicent D Sanciangco, S. Kaeppler, C. Buell, M. Casler
- Biology, MedicineG3: Genes, Genomes, Genetics
- 10 April 2019
The results suggested that genomic selection could provide valuable opportunities for improving winter survival and accelerate the lowland switchgrass breeding programs toward the development of cold tolerant cultivars suitable for northern latitudes.
Quantitative Trait Loci for Freezing Tolerance in a Lowland x Upland Switchgrass Population
- H. Poudel, Millicent D Sanciangco, S. Kaeppler, C. Buell, M. Casler
- Biology, MedicineFrontiers in Plant Science
- 29 March 2019
A comparative genomics study revealed important freezing tolerance genes/proteins, such as COR47, DREB2B, zinc finger-CCCH, WRKY, GIGANTEA, HSP70, and NRT2, among others that reside within the 1.5 LOD confidence interval of the identified QTL.
Genome-Wide Association Study in Pseudo-F2 Populations of Switchgrass Identifies Genetic Loci Affecting Heading and Anthesis Dates
- Megan Taylor, Carl-Erik Tornqvist, Yiwei Jiang
- Biology, MedicineFrontiers in Plant Science
- 13 September 2018
Results demonstrate that genetic variants related to floral development could lend themselves to a long-term goal of developing late flowering varieties of switchgrass with high biomass yield.
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