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NCBI GEO: archive for functional genomics data sets—update

• Tanya Barrett, Stephen E. Wilhite, +14 authors Alexandra Soboleva
• Nucleic Acids Research
• 2013

The Gene Expression Omnibus (GEO, http://www.ncbi.nlm.nih.gov/geo/) is an international public repository for high-throughput microarray and next-generation sequence functional genomic data sets… (More)

NCBI GEO: archive for functional genomics data sets—10 years on

• Tanya Barrett, Dennis B. Troup, +12 authors Alexandra Soboleva
• Nucleic Acids Research
• 2011

A decade ago, the Gene Expression Omnibus (GEO) database was established at the National Center for Biotechnology Information (NCBI). The original objective of GEO was to serve as a public repository… (More)

Annotating the human genome with Disease Ontology

• John D. Osborne, Jared Flatow, +6 authors Rex L. Chisholm
• BMC Genomics
• 2009

The human genome has been extensively annotated with Gene Ontology for biological functions, but minimally computationally annotated for diseases. We used the Unified Medical Language System (UMLS)… (More)

From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations

• Pan Du, Gang Feng, +4 authors Simon M. Lin
• Bioinformatics
• 2009

Subjective methods have been reported to adapt a general-purpose ontology for a specific application. For example, Gene Ontology (GO) Slim was created from GO to generate a highly aggregated report… (More)

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