The prediction of protein sub-cellular localization is an important step toward elucidating protein function. For each query protein sequence, LocTree2 applies machine learning (profile kernel SVM) to predict the native sub-cellular localization in 18 classes for eukaryotes, in six for bacteria and in three for archaea. The method outputs a score that… (More)
Amyotrophic lateral sclerosis (ALS) is a devastating progressive neurodegenerative disease affecting primarily the upper and lower motor neurons. A common feature of all ALS cases is a well-characterized neuroinflammatory reaction within the central nervous system (CNS). However, much less is known about the role of the peripheral immune system and its… (More)
Cancer cells can be specifically driven into apoptosis by activating Death-receptor-4 (DR4; TRAIL-R1) and/ or Death-receptor-5 (DR5; TRAIL-R2). Albeit showing promising preclinical efficacy, first-generation protein therapeutics addressing this pathway, especially agonistic anti-DR4/DR5-monoclonal antibodies, have not been clinically successful to date. Due… (More)
In high-performance computing applications, a high-level I/O call will trigger activities on a multitude of hardware components. These are massively parallel systems supported by huge storage systems and internal software layers. Their complex interplay currently makes it impossible to identify the causes for and the locations of I/O bottlenecks. Existing… (More)
Understanding performance of modern system architec-tures is an always present and challenging task. BenchIT – a new tool to support the collection and presentation of such measurement data – is developed by the Center for High Performance Computing Dresden.