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SC3 - consensus clustering of single-cell RNA-Seq data
Single-cell RNA-seq enables the quantitative characterization of cell types based on global transcriptome profiles. We present single-cell consensus clustering (SC3), a user-friendly tool forExpand
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Synchronization in small-world systems.
TLDR
We quantify the dynamical implications of the small-world phenomenon by considering the generic synchronization of oscillator networks of arbitrary topology. Expand
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Transcriptome-wide noise controls lineage choice in mammalian progenitor cells
Phenotypic cell-to-cell variability within clonal populations may be a manifestation of ‘gene expression noise’, or it may reflect stable phenotypic variants. Such ‘non-genetic cell individuality’Expand
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Laplacian Dynamics and Multiscale Modular Structure in Networks
Most methods proposed to uncover communities in complex networks rely on their structural properties. Here we introduce the stability of a network partition, a measure of its quality defined in termsExpand
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Stability of graph communities across time scales
TLDR
We introduce the stability of a partition, a measure of its quality as a community structure based on the clustered autocovariance of a dynamic Markov process taking place on the network. Expand
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Titration of chaos with added noise
Deterministic chaos has been implicated in numerous natural and man-made complex phenomena ranging from quantum to astronomical scales and in disciplines as diverse as meteorology, physiology,Expand
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SC3 - consensus clustering of single-cell RNA-Seq data
TLDR
Using single-cell RNA-seq (scRNA-seq), the full transcriptome of individual cells can be acquired, enabling a quantitative cell-type characterisation based on expression profiles. Expand
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Natural Connectivity of Complex Networks
TLDR
We show that the natural connectivity can be derived mathematically from the graph spectrum as an average eigenvalue and that it changes strictly monotonically with the addition or deletion of edges. Expand
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The Effect of Spatially Inhomogeneous Extracellular Electric Fields on Neurons
The cooperative action of neurons and glia generates electrical fields, but their effect on individual neurons via ephaptic interactions is mostly unknown. Here, we analyze the impact of spatiallyExpand
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Spectral Measure of Structural Robustness in Complex Networks
TLDR
We introduce the concept of natural connectivity as a measure of structural robustness in complex networks. Expand
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