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- Matthew Cook
- Complex Systems
- 2004

The purpose of this paper is to prove that one of the simplest one dimensional cellular automata is computationally universal, implying that many questions concerning its behavior, such as whether a particular sequence of bits will occur, or whether the behavior will become periodic, are formally undecidable. The cellular automaton we will prove this for is… (More)

- Peter U. Diehl, Matthew Cook
- Front. Comput. Neurosci.
- 2015

In order to understand how the mammalian neocortex is performing computations, two things are necessary; we need to have a good understanding of the available neuronal processing units and mechanisms, and we need to gain a better understanding of how those mechanisms are combined to build functioning systems. Therefore, in recent years there is an… (More)

- Peter U. Diehl, Daniel Neil, Jonathan Binas, Matthew Cook, Shih-Chii Liu, Michael Pfeiffer
- 2015 International Joint Conference on Neural…
- 2015

Deep neural networks such as Convolutional Networks (ConvNets) and Deep Belief Networks (DBNs) represent the state-of-the-art for many machine learning and computer vision classification problems. To overcome the large computational cost of deep networks, spiking deep networks have recently been proposed, given the specialized hardware now available for… (More)

- Matthew Cook, Yunhui Fu, Robert T. Schweller
- SODA
- 2011

We investigate the power of the Wang tile self-assembly model at temperature 1, a threshold value that permits attachment between any two tiles that share even a single bond. When restricted to deterministic assembly in the plane, no temperature 1 assembly system has been shown to build a shape with a tile complexity smaller than the diameter of the shape.… (More)

Models of ad-hoc wireless networks are often based on the geometric disc abstraction: transmission is assumed to be isotropic, and reliable communication channels are assumed to exist (apart from interference) between nodes closer than a given distance. In reality communication channels are unreliable and communication range is generally not rotationally… (More)

- David Soloveichik, Matthew Cook, Erik Winfree, Jehoshua Bruck
- Natural Computing
- 2008

A highly desired part of the synthetic biology toolbox is an embedded chemical microcontroller, capable of autonomously following a logic program specified by a set of instructions, and interacting with its cellular environment. Strategies for incorporating logic in aqueous chemistry have focused primarily on implementing components, such as logic gates,… (More)

- Jan Funke, Björn Andres, Fred A. Hamprecht, Albert Cardona, Matthew Cook
- 2012 IEEE Conference on Computer Vision and…
- 2012

We present an approach for the automatic reconstruction of neurons from 3D stacks of electron microscopy sections. The core of our system is a set of possible assignments, each of which proposes with some cost a link between neuron regions in consecutive sections. These can model the continuation, branching, and end of neurons. The costs are trainable on… (More)

Motivated by the intriguing complexity of biochemical circuitry within individual cells we study Stochastic Chemical Reaction Networks (SCRNs), a formal model that considers a set of chemical reactions acting on a finite number of molecules in a well-stirred solution according to standard chemical kinetics equations. SCRNs have been widely used for… (More)

We derive percolation results in the continuum plane that lead to what appears to be a general tendency of many stochastic network models. Namely, when the selection mechanism according to which nodes are connected to each other, is sufficiently spread out, then a lower density of nodes, or on average fewer connections per node, are sufficient to obtain an… (More)

Balancing a normal pencil on its tip requires rapid feedback control with latencies on the order of milliseconds. This demonstration shows how a pair of spike-based silicon retina dynamic vision sensors (DVS) is used to provide fast visual feedback for controlling an actuated table to balance an ordinary pencil. Two DVSs view the pencil from right angles.… (More)