Martin Schmollinger

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BACKGROUND Parallel computing is frequently used to speed up computationally expensive tasks in Bioinformatics. RESULTS Herein, a parallel version of the multi-alignment program DIALIGN is introduced. We propose two ways of dividing the program into independent sub-routines that can be run on different processors: (a) pair-wise sequence alignments that(More)
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SUMMARY Searches for variable motifs such as protein-binding sites or promoter regions are more complex than the search for casual motifs. For example, in amino acid sequences comparing motifs alone mostly proves to be insufficient to detect regions that represent proteins with a special function, because the function depends on biochemical properties of(More)
Hierarchically structured architectures are becoming more and more pervasive in the field of parallel and high performance computing. While memory hierarchies have been recognized for a long-time, only in the last years hierarchical parallel structures have gained importance, mainly as a result of the trend towards cluster architectures and high-performance(More)
Dissertation der Fakultät f ¨ ur Informations-und Kognitionswissenschaften der Eberhard-Karls-Universität T ¨ ubingen zur Erlangung des Grades eines Doktors der Naturwissenschaften Preface In the following thesis, we observe methods for designing and optimizing parallel algorithms for SMP clusters. This particular architecture for parallel computers(More)