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Molecular "fingerprints" encoding structural information are the workhorse of cheminformatics and machine learning in drug discovery applications. However, fingerprint representations necessarily emphasize particular aspects of the molecular structure while ignoring others, rather than allowing the model to make data-driven decisions. We describe molecular(More)
This paper reports on a new approach to solving a subset-based points-to analysis for Java using Binary Decision Diagrams (BDDs). In the model checking community, BDDs have been shown very effective for representing large sets and solving very large verification problems. Our work shows that BDDs can also be very effective for developing a points-to(More)
Direct-threaded interpreters use indirect branches to dispatch bytecodes, but deeply-pipelined architectures rely on branch prediction for performance. Due to the poor correlation between the virtual program's control flow and the hardware program counter, which we call the context problem, direct threading's indirect branches are poorly predicted by the(More)
Interpreters are widely used to implement portable language runtime environments. Programs written in these languages may benefit from performance beyond that obtainable by optimizing interpretation alone. A modern high-performance mixed-mode virtual machine (VM) includes a method-based Just In Time (JIT) compiler. A method-based JIT, however , requires the(More)
2005 Despite their advantages, lock-free algorithms are often not adopted in practice, partly due to the perception that they perform poorly relative to lock-based alternatives in common situations when there is little contention for objects or the CPUs. We show that memory reclamation can be a dominant performance cost for lock-free algorithms; therefore,(More)
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