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MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes.
MAPMAN is a user-driven tool that displays large data sets onto diagrams of metabolic pathways or other processes. SCAVENGER modules assign the measured parameters to hierarchical categories (formedExpand
PHO2, MicroRNA399, and PHR1 Define a Phosphate-Signaling Pathway in Plants1[W][OA]
Inorganic phosphate (Pi)-signaling pathways in plants are still largely unknown. The Arabidopsis (Arabidopsis thaliana) pho2 mutant overaccumulates Pi in leaves in Pi-replete conditions.Expand
The interaction between elevated carbon dioxide and nitrogen nutrition: the physiological and molecular background
AGPase, ADP glucose pyrophosphorylase GS, glutamine synthetase GOGAT, glutamate : oxoglutarate amino transferase NADP-ICDH, NADP-dependent isocitrate dehydrogenase NR, nitrate reductase OPPP,Expand
RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics
TLDR
We have developed RobiNA as an integrated solution that consolidates all steps of RNA-Seq-based differential gene-expression analysis in one user-friendly cross-platform application featuring a rich graphical user interface. Expand
Extension of the Visualization Tool MapMan to Allow Statistical Analysis of Arrays, Display of Coresponding Genes, and Comparison with Known Responses1
MapMan is a user-driven tool that displays large genomics datasets onto diagrams of metabolic pathways or other processes. Here, we present new developments, including improvements of the geneExpand
Genome-Wide Reprogramming of Primary and Secondary Metabolism, Protein Synthesis, Cellular Growth Processes, and the Regulatory Infrastructure of Arabidopsis in Response to Nitrogen1[w]
Transcriptome analysis, using Affymetrix ATH1 arrays and a real-time reverse transcription-PCR platform for >1,400 transcription factors, was performed to identify processes affected by long-termExpand
A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize.
MapMan is a software tool that supports the visualization of profiling data sets in the context of existing knowledge. Scavenger modules generate hierarchical and essentially non-redundant geneExpand
PageMan: An interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments
TLDR
We introduce PageMan, a multiplatform, user-friendly, and stand-alone software tool that annotates, investigates, and condenses high-throughput microarray data in the context of functional ontologies. Expand
Rising Co2 Levels and Their Potential Significance for Carbon Flow in Photosynthetic Cells
Abstract. In the first part of this review, I discuss how we can predict the direct short-term effect of enhanced CO2 on photosynthetic rate in C3 terrestrial plants. To do this, I consider: (1) toExpand
Sugars and Circadian Regulation Make Major Contributions to the Global Regulation of Diurnal Gene Expression in Arabidopsis[W][OA]
The diurnal cycle strongly influences many plant metabolic and physiological processes. Arabidopsis thaliana rosettes were harvested six times during 12-h-light/12-h-dark treatments to investigateExpand
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