• Publications
  • Influence
The evolution of Protégé: an environment for knowledge-based systems development
This paper follows the evolution of the Protege project through three distinct re-implementations, and describes the overall methodology, the design decisions, and the lessons learned over the duration of the project. Expand
The Protégé OWL Plugin: An Open Development Environment for Semantic Web Applications
The architecture of the OWL Plugin is described, the most important features are walked through, and some of the design decisions are discussed. Expand
PROMPT: Algorithm and Tool for Automated Ontology Merging and Alignment
PROMPT, an algorithm that provides a semi-automatic approach to ontology merging and alignment, is developed and implemented and is based on an extremely general knowledge model and therefore can be applied across various platforms. Expand
Creating Semantic Web Contents with Protégé-2000
The authors describe how Protege-2000, a tool for ontology development and knowledge acquisition, can be adapted for editing models in different Semantic Web languages. Expand
The Knowledge Model of Protégé-2000: Combining Interoperability and Flexibility
This work describes ProtEgE-2000 knowledge model that makes the import and export of knowledge bases from and to other knowledge-base servers easy and demonstrates that it can resolve many of the differences between the knowledge models of ProtEe-2000 and Resource Description Framework (RDF)--a system for annotating Web pages with knowledge elements--by defining a new metaclass set. Expand
Network Analysis of Intrinsic Functional Brain Connectivity in Alzheimer's Disease
This study provides new evidence that there is disrupted organization of functional brain networks in AD, and suggests that these network measures may be useful as an imaging-based biomarker to distinguish AD from healthy aging. Expand
The PROMPT suite: interactive tools for ontology merging and mapping
A suite of tools for managing multiple ontologies provides users with a uniform framework for comparing, aligning, and merging ontologies, maintaining versions, translating between different formalisms, and identifying inconsistencies and potential problems. Expand
The protégé project: a look back and a look forward
  • M. Musen
  • Engineering, Computer Science
  • 16 June 2015
Protege has become the most widely used software for building and maintaining ontologies, and the Web-based version has become extremely popular, and it recently exceeded the desktop-client in its degree of usage. Expand
BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications
The National Center for Biomedical Ontology (NCBO) has developed BioPortal, a web portal that provides access to a library of biomedical ontologies and terminologies via the NCBO Web services. Expand
BioPortal: ontologies and integrated data resources at the click of a mouse
BioPortal not only provides investigators, clinicians, and developers ‘one-stop shopping’ to programmatically access biomedical ontologies, but also provides support to integrate data from a variety of biomedical resources. Expand