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The evolution of Protégé: an environment for knowledge-based systems development
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The Protégé OWL Plugin: An Open Development Environment for Semantic Web Applications
TLDR
The architecture of the OWL Plugin is described, the most important features are walked through, and some of the design decisions are discussed.
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PROMPT: Algorithm and Tool for Automated Ontology Merging and Alignment
TLDR
PROMPT, an algorithm that provides a semi-automatic approach to ontology merging and alignment, is developed and implemented and is based on an extremely general knowledge model and therefore can be applied across various platforms.
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Creating Semantic Web Contents with Protégé-2000
TLDR
The authors describe how Protege-2000, a tool for ontology development and knowledge acquisition, can be adapted for editing models in different Semantic Web languages.
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The protégé project: a look back and a look forward
  • M. Musen
  • Computer Science
    SIGAI
  • 16 June 2015
TLDR
Protege has become the most widely used software for building and maintaining ontologies, and the Web-based version has become extremely popular, and it recently exceeded the desktop-client in its degree of usage.
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The Knowledge Model of Protégé-2000: Combining Interoperability and Flexibility
TLDR
This work describes ProtEgE-2000 knowledge model that makes the import and export of knowledge bases from and to other knowledge-base servers easy and demonstrates that it can resolve many of the differences between the knowledge models of ProtEe-2000 and Resource Description Framework (RDF)--a system for annotating Web pages with knowledge elements--by defining a new metaclass set.
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Network Analysis of Intrinsic Functional Brain Connectivity in Alzheimer's Disease
TLDR
This study provides new evidence that there is disrupted organization of functional brain networks in AD, and suggests that these network measures may be useful as an imaging-based biomarker to distinguish AD from healthy aging.
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The PROMPT suite: interactive tools for ontology merging and mapping
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BioPortal: ontologies and integrated data resources at the click of a mouse
TLDR
BioPortal not only provides investigators, clinicians, and developers ‘one-stop shopping’ to programmatically access biomedical ontologies, but also provides support to integrate data from a variety of biomedical resources.
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BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications
TLDR
The National Center for Biomedical Ontology (NCBO) has developed BioPortal, a web portal that provides access to a library of biomedical ontologies and terminologies via the NCBO Web services.
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