Share This Author
CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure
Three algorithms for aligning multiple replicate analyses of the same data set using the computer program CLUMPP (CLUster Matching and Permutation Program) are described.
Clumpak: a program for identifying clustering modes and packaging population structure inferences across K
- N. Kopelman, Jonathan Mayzel, M. Jakobsson, N. Rosenberg, I. Mayrose
- BiologyMolecular ecology resources
- 1 September 2015
Clumpak, available at http://clumpak.tau.ac.il, simplifies the use of model-based analyses of population structure in population genetics and molecular ecology by automating the postprocessing of results of model‐based population structure analyses.
The Pattern of Polymorphism in Arabidopsis thaliana
The data support the utility of A. thaliana as a model for evolutionary functional genomics and suggest there is a genome-wide excess of rare alleles and too much variation between genomic regions in the level of polymorphism.
ADZE: a rarefaction approach for counting alleles private to combinations of populations
A generalized rarefaction approach for counting alleles private to combinations of populations, which supports the possibility of a migration out of Africa into Oceania separate from the migrations responsible for the majority of the ancestry of the modern populations of Asia.
Genotype, haplotype and copy-number variation in worldwide human populations
The analysis of high-quality genotypes at 525,910 single-nucleotide polymorphisms (SNPs) and 396 copy-number-variable loci in a worldwide sample of 29 populations produces new inferences about inter-population variation, support the utility of CNVs in human population-genetic research, and serve as a genomic resource for human- genetic studies in diverse worldwide populations.
Genetic Variation and Population Structure in Native Americans
Evidence is observed of a higher level of diversity and lower level of population structure in western South America compared to eastern South America, a relative lack of differentiation between Mesoamerican and Andean populations, and a partial agreement on a local scale between genetic similarity and the linguistic classification of populations.
Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans
The findings reveal that western Eurasian genetic signatures in modern-day Native Americans derive not only from post-Columbian admixture, as commonly thought, but also from a mixed ancestry of the First Americans.
A worldwide survey of haplotype variation and linkage disequilibrium in the human genome
Although the portability of tag SNPs based on the HapMap is reduced in low-LD Africans, the HAPMap will be helpful for the design of genome-wide association mapping studies in nearly all human populations.
The genome of a Late Pleistocene human from a Clovis burial site in western Montana
The genome sequence of a male infant recovered from the Anzick burial site in western Montana is sequenced and it is shown that the gene flow from the Siberian Upper Palaeolithic Mal’ta population into Native American ancestors is also shared by the AnZick-1 individual and thus happened before 12,600 years bp.
Genomic Variation in Seven Khoe-San Groups Reveals Adaptation and Complex African History
Genetic variation in various sub-Saharan populations did not localize the origin of modern humans to a single geographic region within Africa; instead, it indicated a history of admixture and stratification, and illustrated the importance of African genomic diversity in understanding human evolutionary history.