M. Diekhans

Publications115
h-index56
Citations34,537
Highly Influential Citations1,986
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GENCODE: the reference human genome annotation for The ENCODE Project.
The GENCODE Consortium aims to identify all gene features in the human genome using a combination of computational analysis, manual annotation, and experimental validation. Since the first public… Expand
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Initial sequencing and comparative analysis of the mouse genome.
The sequence of the mouse genome is a key informational tool for understanding the contents of the human genome and a key experimental tool for biomedical research. Here, we report the results of an… Expand
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The UCSC Genome Browser Database
TLDR
The University of California Santa Cruz (UCSC) Genome Browser Database is an up to date source for genome sequence data integrated with a large collection of related annotations. Expand
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Using native and syntenically mapped cDNA alignments to improve de novo gene finding
TLDR
MOTIVATION Computational annotation of protein coding genes in genomic DNA is a widely used and essential tool for analyzing newly sequenced genomes. Expand
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The UCSC genome browser database: update 2007
TLDR
This is an open access version of the Genome Browser Database (GBD) and a family of tools for accessing this database. Expand
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The UCSC Genome Browser database: update 2010
TLDR
The University of California, Santa Cruz (UCSC) Genome Browser website (http://genome.ucsc.edu/) provides a large database of publicly available sequence and annotation data along with an integrated tool set for examining and comparing the genomes of organisms, aligning sequence to genomes, and displaying and sharing users' own annotation data. Expand
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The UCSC Genome Browser database: 2014 update
TLDR
This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. Expand
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ENCODE Data in the UCSC Genome Browser: year 5 update
TLDR
The Encyclopedia of DNA Elements (ENCODE), http://encodeproject.org, has completed its fifth year of scientific collaboration to create a comprehensive catalog of functional elements in the human genome, and its third year of investigations in the mouse genome. Expand
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The UCSC Genome Browser Database: update 2006
TLDR
The University of California Santa Cruz Genome Browser Database (GBD) contains sequence and annotation data for the genomes of about a dozen vertebrate species and several major model organisms. Expand
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  • PDF
The UCSC Genome Browser database: 2016 update
For the past 15 years, the UCSC Genome Browser (http://genome.ucsc.edu/) has served the international research community by offering an integrated platform for viewing and analyzing information from… Expand
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  • 56