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SciPy 1.0: fundamental algorithms for scientific computing in Python
An overview of the capabilities and development practices of SciPy 1.0 is provided and some recent technical developments are highlighted.
Region of interest analysis using an SPM toolbox
A toolbox called MarsBar is implemented for region of interest analysis within the SPM99 software package, which may have many advantages in terms of statistical power and the ease of interpretation of neuroimaging data.
Array programming with NumPy
How a few fundamental array concepts lead to a simple and powerful programming paradigm for organizing, exploring and analysing scientific data is reviewed.
Valid conjunction inference with the minimum statistic
Stereotaxic display of brain lesions.
This article describes freely available software for presenting stereotaxically aligned patient scans and suggests that this technique of presenting lesions in terms of images normalized to standard stereOTaxic space should become the standard for neuropsychological studies.
Rhythm and Beat Perception in Motor Areas of the Brain
It is concluded that, in addition to their role in movement production, the basal ganglia and SMAs may mediate beat perception.
The problem of functional localization in the human brain
Methods for reporting location in functional imaging are reviewed and the problems that arise from the great variability in brain anatomy between individuals are discussed.
Prefrontal cortical function and anxiety: controlling attention to threat-related stimuli
It is found that rostral ACC was strongly activated by infrequent threat-related distractors, consistent with a role for this area in responding to unexpected processing conflict caused by salient emotional stimuli and supports the proposal that anxiety is associated with reduced top-down control over threat- related distractors.
Dipy, a library for the analysis of diffusion MRI data
Dipy aims to provide transparent implementations for all the different steps of dMRI analysis with a uniform programming interface, and has implemented classical signal reconstruction techniques, such as the diffusion tensor model and deterministic fiber tractography.
Actions Speak Louder Than Functions: The Importance of Manipulability and Action in Tool Representation
These activations were insensitive to retrieval task, suggesting that visually presented tools automatically recruit both left VPMCx and left PMTG in response to action features that are inherent in tool representations.