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Our recently developed rice proteogenomics database (OryzaPG-DB) is the first sustainable resource for rice shotgun-based proteogenomics, providing information on peptides identified in rice protein digested peptides measured by means of liquid chromatography-tandem mass spectrometry (LC-MS/MS), and mapping of the peptides to their genomic origins and the(More)
Various receptors on cell surface recognize specific extracellular molecules and trigger signal transduction altering gene expression in the nucleus. Gain or loss-of-function mutations of one molecule have shown to affect alternative signaling pathways with a poorly understood mechanism. In Toll-like receptor (TLR) 4 signaling, which branches into MyD88-(More)
The Toll-like receptor (TLR) 3 plays a critical role in mammalian innate immune response against viral attacks by recognizing double-stranded RNA (dsRNA) or its synthetic analog polyinosinic-polycytidylic acid (poly (IratioC)). This leads to the activation of MAP kinases and NF-kappaB which results in the induction of type I interferons and proinflammatory(More)
BACKGROUND Proteogenomics aims to utilize experimental proteome information for refinement of genome annotation. Since mass spectrometry-based shotgun proteomics approaches provide large-scale peptide sequencing data with high throughput, a data repository for shotgun proteogenomics would represent a valuable source of gene expression evidence at the(More)
The aim of this paper is to investigate the influences of rotation, magnetic field, initial stress, and gravity field on Rayleigh waves in a homogeneous orthotropic elastic medium. The government equations is solved by Lame's potential and obtained the frequency equation which determines the velocity of Rayleigh waves, including rotation, initial stress,(More)
Keywords: Incompressible Initial stress Anisotropic S-wave Gravity field a b s t r a c t In this paper, propagation of shear waves in a non-homogeneous anisotropic incompress-ible, gravity field and initially stressed medium is studied. Analytical analysis reveals that the velocity of propagation of the shear waves depends upon the direction of propagation,(More)
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