• Publications
  • Influence
Estimating species phylogenies using coalescence times among sequences.
The estimation of species trees (phylogenies) is one of the most important problems in evolutionary biology, and recently, there has been greater appreciation of the need to estimate species treesExpand
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BEST: Bayesian estimation of species trees under the coalescent model
  • Liang Liu
  • Computer Science, Medicine
  • Bioinform.
  • 1 November 2008
UNLABELLED BEST implements a Bayesian hierarchical model to jointly estimate gene trees and the species tree from multilocus sequences. It provides a new option for estimating species phylogeniesExpand
  • 368
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High-resolution species trees without concatenation
The vast majority of phylogenetic models focus on resolution of gene trees, despite the fact that phylogenies of species in which gene trees are embedded are of primary interest. We analyze aExpand
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Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions.
The desire to infer the evolutionary history of a group of species should be more viable now that a considerable amount of multilocus molecular data is available. However, the current molecularExpand
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A multi-objective ant colony system algorithm for virtual machine placement in cloud computing
Virtual machine placement is a process of mapping virtual machines to physical machines. The optimal placement is important for improving power efficiency and resource utilization in a cloudExpand
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Estimating Species Trees Using Multiple-Allele DNA Sequence Data
Abstract Several techniques, such as concatenation and consensus methods, are available for combining data from multiple loci to produce a single statement of phylogenetic relationships. However,Expand
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Estimating Origin-Destination Flows Using Mobile Phone Location Data
Using an algorithm to analyze opportunistically collected mobile phone location data, the authors estimate weekday and weekend travel patterns of a large metropolitan area with high accuracy.
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Breast cancer-secreted miR-122 reprograms glucose metabolism in pre-metastatic niche to promote metastasis
Reprogrammed glucose metabolism as a result of increased glycolysis and glucose uptake is a hallmark of cancer. Here we show that cancer cells can suppress glucose uptake by non-tumour cells in theExpand
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Phybase: an R package for species tree analysis
MOTIVATION Phybase is an R package for phylogenetic analysis using species trees. It provides functions to read, write, manipulate, simulate, estimate, summarize and plot species trees, which containExpand
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Optical Coherence Tomography Angiography of the Peripapillary Retina in Glaucoma.
IMPORTANCE Vascular factors may have important roles in the pathophysiology of glaucoma. A practical method for the clinical evaluation of ocular perfusion is needed to improve glaucoma management.Expand
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