The Cancer Genome Atlas Network recently cataloged recurrent genomic abnormalities in glioblastoma multiforme (GBM). We describe a robust gene expression-based molecular classification of GBM into… (More)
Swoogle is a crawler-based indexing and retrieval system for the Semantic Web. It extracts metadata for each discovered document, and computes relations between documents. Discovered documents are… (More)
We have profiled promoter DNA methylation alterations in 272 glioblastoma tumors in the context of The Cancer Genome Atlas (TCGA). We found that a distinct subset of samples displays concerted… (More)
Genomic structural variants (SVs) are abundant in humans, differing from other forms of variation in extent, origin and functional impact. Despite progress in SV characterization, the nucleotide… (More)
Swoogle helps software agents and knowledge engineers find Semantic Web knowledge encoded in RDF and OWL documents on the Web. Navigating such a Semantic Web on the Web is difficult due to the… (More)
Semantic Web languages are being used to represent, encode and exchange semantic data in many contexts beyond the Web – in databases, multiagent systems, mobile computing, and ad hoc networking… (More)
Semantic Web researchers have initially focused on the representation, development and use of ontologies but paid less attention to the social and structural relationships involved. The past year has… (More)
Most knowledge on the Web is encoded as natural language text, which is convenient for human users but very difficult for software agents to understand. Even with increased use of XML-encoded… (More)
Millions of owl:sameAs statements have been published on the Web of Data. Due to its unique role and heavy usage in Linked Data integration, owl:sameAs has become a topic of increasing interest and… (More)
In this paper, we describe a Semantic Web application that detects Conflict of Interest (COI) relationships among potential reviewers and authors of scientific papers. This application discovers… (More)