• Publications
  • Influence
Centrifuge: rapid and sensitive classification of metagenomic sequences.
Centrifuge is a novel microbial classification engine that enables rapid, accurate, and sensitive labeling of reads and quantification of species on desktop computers. The system uses an indexingExpand
  • 433
  • 67
  • PDF
Thousands of exon skipping events differentiate among splicing patterns in sixteen human tissues
Alternative splicing is widely recognized for its roles in regulating genes and creating gene diversity. However, despite many efforts, the repertoire of gene splicing variation is still incompletelyExpand
  • 166
  • 15
  • PDF
Soybean (Glycine max) SWEET gene family: insights through comparative genomics, transcriptome profiling and whole genome re-sequence analysis
BackgroundSWEET (MtN3_saliva) domain proteins, a recently identified group of efflux transporters, play an indispensable role in sugar efflux, phloem loading, plant-pathogen interaction andExpand
  • 82
  • 9
  • PDF
In vitro antimicrobial susceptibility of Streptococcus suis strains isolated from clinically healthy sows in China.
Streptococcus suis is an important pathogen in the swine industry. Because transmission is generally thought to occur between healthy carrier sows and their offspring, it is important to understandExpand
  • 53
  • 9
HIV-1 Disease-Influencing Effects Associated with ZNRD1, HCP5 and HLA-C Alleles Are Attributable Mainly to Either HLA-A10 or HLA-B*57 Alleles
A recent genome-wide association study (GWAS) suggested that polymorphisms in or around the genes HCP5, HLA-C and ZNRD1 confer restriction against HIV-1 viral replication or disease progression.Expand
  • 74
  • 7
  • PDF
Functional expression of CCR2 by human fetal astrocytes
Astrocytes from different sources bind the chemokine monocyte chemoattractant factor (MCP‐1), yet functional expression in these cells of CCR2, the major receptor for this ligand, has been a matterExpand
  • 67
  • 6
Global H4 acetylation analysis by ChIP-chip in SLE monocytes
Systemic lupus erythematosus (SLE) is a polygenic disorder affecting approximately 1 in 1000 adults. Recent data have implicated interferons (IFN) in the pathogenesis, and the expressions of manyExpand
  • 61
  • 5
Molecular determination of oxytetracycline‐resistant bacteria and their resistance genes from mariculture environments of China
Aims:  To assess the diversity of antibiotic‐resistant bacteria and their resistance genes in typical maricultural environments.
  • 78
  • 5
Identification and Comparative Analysis of Differential Gene Expression in Soybean Leaf Tissue under Drought and Flooding Stress Revealed by RNA-Seq
Drought and flooding are two major causes of severe yield loss in soybean worldwide. A lack of knowledge of the molecular mechanisms involved in drought and flood stress has been a limiting factorExpand
  • 61
  • 5
  • PDF
Brassinosteroids regulate the differential growth of Arabidopsis hypocotyls through auxin signaling components IAA19 and ARF7.
Brassinosteroids (BRs) are an important class of phytohormones which regulates a wide range of physiological processes. Genetic and physiological studies have revealed that BR responses usuallyExpand
  • 48
  • 5