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Genomic variation in 3,010 diverse accessions of Asian cultivated rice
Here we analyse genetic variation, population structure and diversity among 3,010 diverse Asian cultivated rice (Oryza sativa L.) genomes from the 3,000 Rice Genomes Project. Our results areExpand
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SNP-Seek database of SNPs derived from 3000 rice genomes
TLDR
We have identified about 20 million rice SNPs by aligning reads from the 3000 rice genomes project with the Nipponbare genome. Expand
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Rice SNP-seek database update: new SNPs, indels, and queries
TLDR
We describe updates to the Rice SNP-Seek Database since its first release. Expand
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SNP-Seek II: A resource for allele mining and analysis of big genomic data in Oryza sativa ☆
Abstract The 3000 Rice Genomes Project generated a large dataset of genomic variation to the world’s most important crop, Oryza sativa L. Using the Burrows-Wheeler Aligner (BWA) and the GenomeExpand
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Characterization of Growth and Metabolism of the Haloalkaliphile Natronomonas pharaonis
TLDR
Natronomonas pharaonis is an archaeon adapted to two extreme conditions: high salt concentration and alkaline pH. Here, we present a genome-scale, manually curated metabolic reconstruction and a constraints-based model for the microorganism. Expand
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Identification of candidate genes for drought stress tolerance in rice by the integration of a genetic (QTL) map with the rice genome physical map.
Genetic improvement for drought stress tolerance in rice involves the quantitative nature of the trait, which reflects the additive effects of several genetic loci throughout the genome. YieldExpand
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Gene expression microarrays and their application in drought stress research.
Initial physiological adjustments in response to drought stress lead to drastic changes in gene expression. The traditional approaches of assessing such drought-induced changes in gene expressionExpand
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SNP-Seek Database
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Rice Galaxy: an open resource for plant science
Background Rice molecular genetics, breeding, genetic diversity, and allied research (such as rice-pathogen interaction) have adopted sequencing technologies and high density genotyping platforms forExpand
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Rice Galaxy: an open resource for plant science
Abstract Background Rice molecular genetics, breeding, genetic diversity, and allied research (such as rice-pathogen interaction) have adopted sequencing technologies and high-density genotypingExpand
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