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To evaluate and compare the performance of variant calling methods and their confidence scores, comparisons between a test call set and a " gold standard " need to be carried out. Unfortunately , these comparisons are not straightforward with the current Variant Call Files (VCF), which are the standard output of most variant calling algorithms for(More)
The analysis of whole-genome or exome sequencing data from trios and pedigrees has been successfully applied to the identification of disease-causing mutations. However, most methods used to identify and genotype genetic variants from next-generation sequencing data ignore the relationships between samples, resulting in significant Mendelian errors, false(More)
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