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- Berit Mannfors, Noemi G. Mirkin, Kim Palmö, Samuel Krimm
- Journal of Computational Chemistry
- 2001

Our previously developed polarizable electrostatic model is applied to isolated N-methylacetamide (NMA) and to three hydrogen-bonded configurations of the NMA dimer. Two versions of the model are studied. In the first one (POL1), polarizability along the valence bonds is described by induced bond charge increments, and polarizability perpendicular to the… (More)

- Kim Palmö, Lars-Olof Pietilä, Samuel Krimm
- Computers & Chemistry
- 1993

Abatrac-A procedure is given by which parameters of nonbonded interactions in a molecular mechanics energy function can be optimized for maximum compatibility with eb inif& force fields and structures. The method is based on a previously derived transformation of ob initio valence parameters to the molecular mechanics formalism. Explicit analytical… (More)

- Kim Palmö, Samuel Krimm
- Journal of Computational Chemistry
- 1998

A new electrostatic model for the calculation of infrared intensities in molecular mechanics and molecular dynamics is presented. The model is based on atomic charges, atomic charge fluxes, and internal coordinate dipoles and their fluxes. The internal coordinate dipoles are used instead of atomic dipoles, thus simplifying the derivation of parameters. The… (More)

- Sang-Ho Lee, Kim Palmö, Samuel Krimm
- Journal of Computational Chemistry
- 1999

With currently used definitions of out-of-plane angle and bond angle internal coordinates, Cartesian derivatives have singularities, at "r2 in the former case and in the latter. If either of these occur during molecular mechanics or dynamics simulations, the forces are not well defined. To avoid such difficulties, we provide new out-of-plane and bond… (More)

- Kim Palmö, Lars-Olof Pietilä, Samuel Krimm
- Computers & Chemistry
- 1991

The rapid development of computers in recent years has brought increasingly complex compounds into the range of high level ab-initio calculations. Such calculations produce valuable results which In many cases would be difficult or even impossible to obtain, with comparable accuracy, in any other way (Fogarasi & F'ulay, Annu. Rev. Thus, it is highly… (More)

- Sang-Ho Lee, Kim Palmö, Samuel Krimm
- Journal of Computational Chemistry
- 2007

The stability of a general molecular dynamics (MD) integration scheme is examined for simulations in generalized (internal plus external) coordinates (GCs). An analytic expression is derived for the local error in energy during each integration time step. This shows that the explicit dependence of the mass-matrix on GCs, which makes the system's Lagrange… (More)

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